View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21534_low_3 (Length: 478)
Name: NF21534_low_3
Description: NF21534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21534_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 67 - 443
Target Start/End: Original strand, 27770549 - 27770928
Alignment:
| Q |
67 |
tctggtgtcatgtctacacttaatagtgtacaatattgagataggatgtcgaatattgttatgtccaattaataaatgtgaagttcttaattcaaaaatg |
166 |
Q |
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| T |
27770549 |
tctggtgtcatgtctacacttaatagtgtacaatattgagataggatgtcgaatattgt-atgtccaattaataaatgtgaagtttttaattcaaaaatg |
27770647 |
T |
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| Q |
167 |
aattcttacagttaagatatgtatctgcattcacgcac----tgaatgcattggtgaatggtgggagttaaatttgataggacactttataaaaatgcaa |
262 |
Q |
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| T |
27770648 |
aattcttacagttaagatatgtatctgcattcacgcacgcactgaa-gcattggtgaatggtgagagttaaatttgataggacacttttcaaaaatgcaa |
27770746 |
T |
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| Q |
263 |
atttaaactttcttgt-aaaatctaaattaccaaacttaatatctaaaccgcccaactatcaactatatcttgaataaatgaattcaagatatccttcct |
361 |
Q |
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| T |
27770747 |
attttaattttctttttaaaatctaaattaccaaacttattatctaaaccgcccaactatcaactatatcttgaataaatgaattcaagatatccttcct |
27770846 |
T |
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| Q |
362 |
gcaaagaatcttgatcccattaattcagggatccaaattgcataaataacatatacatatttaaaagaaaaatacagataag |
443 |
Q |
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| T |
27770847 |
gcaaagaatcttgatcccattaattcagggatccaaattgcataaataacatatacatatttaaaagaaaaatacagataag |
27770928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 27770477 - 27770512
Alignment:
| Q |
18 |
caccatatatttattcgattttcgagttttatattg |
53 |
Q |
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| T |
27770477 |
caccatatatttattcgattttcgagttttatattg |
27770512 |
T |
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