View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21534_low_4 (Length: 385)
Name: NF21534_low_4
Description: NF21534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21534_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 7589315 - 7589680
Alignment:
| Q |
1 |
taaaattgaactattcaccatccaccaacatcgttccacataatcaaccctaattatggaaccattcatttctatatccaatatcctccacaccttctcc |
100 |
Q |
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| T |
7589315 |
taaaattgaactattcaccatccaccaacatcgttccacataatcaaccctaattatggaaccattcatttctagatccaatatcctcctcaccttctcc |
7589414 |
T |
|
| Q |
101 |
taaattatctcacatacttctcattataaataatcttcctattacaattcgttattcattcttacaataagtgcagttattctccaatagagaacaactg |
200 |
Q |
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| T |
7589415 |
taaattatctcacatacttctcattataaataatcttcctattacaattcattattcattcttacaataactgcagttattctccaatagagaacaactg |
7589514 |
T |
|
| Q |
201 |
caattactttaagaatcataaaaatttaaaataaaataatggctcgtcaacttattgttctagccatcatttttgtaaccatgaccaatatggtcatggc |
300 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
7589515 |
caattactttaagaatcacaaaaatttaaaataaaataatggctcgtcaacttattgttctcgccatcatttttgtaaccatggccaatatggtcatggc |
7589614 |
T |
|
| Q |
301 |
taaagaagtatccccatcagcatcccctaagtcatcaccatcaccgtcgtcagcaccaaaagcatc |
366 |
Q |
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||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||| ||||||| |
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| T |
7589615 |
taaagaagtatcctcatcagcatcccctaaatcatcaccatcaccatcgtcagcaccagaagcatc |
7589680 |
T |
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