View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21534_low_5 (Length: 382)
Name: NF21534_low_5
Description: NF21534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21534_low_5 |
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| [»] scaffold0941 (1 HSPs) |
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| [»] scaffold0098 (1 HSPs) |
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Alignment Details
Target: scaffold0941 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: scaffold0941
Description:
Target: scaffold0941; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 19 - 376
Target Start/End: Complemental strand, 1535 - 1178
Alignment:
| Q |
19 |
agcaccaacctttgatcttgtgatataaggctttgattttgaactcttcagcaatgcagctctcttttcagctttcttagnnnnnnnacttgtcaccatc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1535 |
agcaccaacctttgatcttgtgatataaggctttgattttgaactcttcagcaatgcagctctcttttcagctttcttagttgttttacttgtcaccatc |
1436 |
T |
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| Q |
119 |
tgaaatccatgctcatcaacttctggaactgaattatctgcttgtttagacatggcttgctgtgctggtaatttaccatacaagtttctatttggactgc |
218 |
Q |
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| T |
1435 |
tgaaattcatgctcatcaacttctggaactgaattatctgcttgtttagacatggcttgctgtgctggtaatttaccatacaagttcctatttggactgc |
1336 |
T |
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| Q |
219 |
tgggattgcctgcatcagtttgttgtgcattatcatcaagtaaatcatcagttggttccatctcctcaagatttgcccaagaatcttttagaaagtttat |
318 |
Q |
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| T |
1335 |
tgggattgcctgcatcagtttgttgtgcattatcatcaagtaaatcatcagttggttccatctcctcaagatttgcccaagaatcttttagaaagtttat |
1236 |
T |
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| Q |
319 |
gtctttttgcacaatttcctgtacttcatcttcatagtctgaactgtcattcttttca |
376 |
Q |
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| T |
1235 |
gtctttttgcacaatttcctgtacttcatcttcatagtctgaactgtcattcttttca |
1178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0098 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: scaffold0098
Description:
Target: scaffold0098; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 19 - 376
Target Start/End: Original strand, 36583 - 36952
Alignment:
| Q |
19 |
agcaccaacctttgatcttgtgatataaggctttgattttgaactcttcagcaatgcagctctcttttcagctttcttagnnnnnnnacttgtcaccatc |
118 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36583 |
agcacgaacctttgatcttgtgatataaggctttgattttgaactcttcaacaatgcagctctcttttcagctttcttagttgttttacttgtcaccatc |
36682 |
T |
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| Q |
119 |
tgaaatccatgctcatcaacttctggaactgaattatctgcttgtttagacatggcttgctgtgctggtaatttaccatacaagtttctatttgga---- |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || |
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| T |
36683 |
tgaaatccatgctcatcaacttctggaactgaattatctgcttgtttagacatggcttgctgtgctagtaatttaccagacaagtttctatttagaacag |
36782 |
T |
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| Q |
215 |
--------ctgctgggattgcctgcatcagtttgttgtgcattatcatcaagtaaatcatcagttggttccatctcctcaagatttgcccaagaatcttt |
306 |
Q |
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| T |
36783 |
tgacaaggctgctggaattgcctgcaacaatttgttgtgcattatcatcaagtaagtcatcagttggttccatctcctcaagatttgcccaagaatcttt |
36882 |
T |
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| Q |
307 |
tagaaagtttatgtctttttgcacaatttcctgtacttcatcttcatagtctgaactgtcattcttttca |
376 |
Q |
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| T |
36883 |
tagaaagttgatgtctttttgcacaatttcctgaacttcatcttcattgtctgaactgtcattcttttca |
36952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 15090940 - 15091122
Alignment:
| Q |
20 |
gcaccaacctttgatcttgtgatataaggctttgattttgaactcttcagcaatgcagctctcttttcagctttcttagnnnnnnnacttgtcaccatct |
119 |
Q |
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|||||||||||||||||||||||||||||||| |||| | |||||| || | ||| |||| |||| | | |||| |||||||||||| | |
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| T |
15090940 |
gcaccaacctttgatcttgtgatataaggcttgttctttggattcttcatcatagttgctttcttctcagttcttttagttgatttacttgtcaccattt |
15091039 |
T |
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| Q |
120 |
gaaatccatgctcatcaacttctggaactgaattatctgcttgtttagacatggcttgctgtgctggtaatttaccatacaag |
202 |
Q |
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|||| || || ||||||||||| |||| ||| | |||||||| ||||||||| ||||||| | ||||| |||||||||||| |
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| T |
15091040 |
gaaagccctggtcatcaacttcaggaattgagtcatctgcttctttagacatttcttgctgcacaggtaacttaccatacaag |
15091122 |
T |
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