View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21534_low_7 (Length: 322)
Name: NF21534_low_7
Description: NF21534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21534_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 140; Significance: 3e-73; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 20 - 163
Target Start/End: Complemental strand, 43383444 - 43383301
Alignment:
| Q |
20 |
acaacaagttgttgtcttctgaaattaggaggagggttaatgcctctccattcacgctcaggatgacaacgcatatgaccaaaaagagccttccatgacc |
119 |
Q |
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| T |
43383444 |
acaacaagttgttgtcttctgaaattaggtggagggttaatgcctctccattcacgctcaggatgacaacgcatatgaccaaaaagagccttccatgacc |
43383345 |
T |
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| Q |
120 |
agaatatcttaccacattcagtgcaagtacgagcaatgttgttc |
163 |
Q |
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| T |
43383344 |
agaatatcttaccacattcagtgcaagtacgagcaatgttgttc |
43383301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 27 - 162
Target Start/End: Complemental strand, 25870158 - 25870023
Alignment:
| Q |
27 |
gttgttgtcttctgaaattaggaggagggttaatgcctctccattcacgctcaggatgacaacgcatatgaccaaaaagagccttccatgaccagaatat |
126 |
Q |
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| T |
25870158 |
gttgttgtcttctgaaattaggaggagggttaatgcctctccattgacgctcaggatgacaacgcatatgaccaaaaagagccttccatgaccagaatat |
25870059 |
T |
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| Q |
127 |
cttaccacattcagtgcaagtacgagcaatgttgtt |
162 |
Q |
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| T |
25870058 |
cttaccacattcagtgcaagtacgagcaatgttgtt |
25870023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 191 - 309
Target Start/End: Complemental strand, 43383282 - 43383170
Alignment:
| Q |
191 |
tccccacccaattccttacgcttcttcttaccagtaacattaacagaatcatctttcatcctgtattgatcaccactactatgatcatcggaccaatttt |
290 |
Q |
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| T |
43383282 |
tccccacccaattccttactcttcttcttaccagtaacagta------tcatctttcatcctgtattgatcaccactactatgatcatcggaccaatttt |
43383189 |
T |
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| Q |
291 |
tatctccacctttcatctc |
309 |
Q |
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| T |
43383188 |
tatctccacctttcatctc |
43383170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 272 - 309
Target Start/End: Complemental strand, 25869970 - 25869933
Alignment:
| Q |
272 |
tgatcatcggaccaatttttatctccacctttcatctc |
309 |
Q |
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| T |
25869970 |
tgatcatcggaccaatttttatctccacctttcatctc |
25869933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 219
Target Start/End: Complemental strand, 25870009 - 25869981
Alignment:
| Q |
191 |
tccccacccaattccttacgcttcttctt |
219 |
Q |
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| T |
25870009 |
tccccacccaattccttacgcttcttctt |
25869981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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