View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21535_low_1 (Length: 553)
Name: NF21535_low_1
Description: NF21535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21535_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 440; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 18 - 504
Target Start/End: Complemental strand, 45365057 - 45364577
Alignment:
| Q |
18 |
cggtgaactaactttgactgttgcctattttctatttcaaaccagaaaaagaactaattattaatgatctacacatgaaaaattaaatgaattgttaata |
117 |
Q |
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||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45365057 |
cggtgaactgactttgactgttgcctattttctgtttcaaaccaaaaaaagaactaattattaatgatctacacatgaaaaattaaatgaattgttaata |
45364958 |
T |
|
| Q |
118 |
ctttagatcataataaacatcaaaacctaatcacccccaggaagctaaatagtgctgcaattacaacttagagttttcaaagaaaggcgtttaagaaaaa |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
45364957 |
ctttagatcataataaacatcaaaacctaatcacccccaggaagctaaatagtgctgcaattacaa------gttttcaaagaaaagcgtttaagaaaaa |
45364864 |
T |
|
| Q |
218 |
gcaaatgcagtttgcaaggtgataagcttcctaggagggtgttaattgttaaactgttagctgtaggcttaaagcaaagaagctttttattggagtttga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45364863 |
gcaaatgcagtttgcaaggtgataagcttcctaggagggtgttaattgttaaactgttagctgtaggcttaaagcaaagaagctttttattggagtttga |
45364764 |
T |
|
| Q |
318 |
ttagatttgtggtatatcttcttttgaagtggaaatttctttggcctcctaacgactagcatactgtttttgccattgttgcatcaaaagtagtttcttt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45364763 |
ttagatttgtggtatatcttcttttgaagtggaaatttctttggcctcctaataactagcatactgtttttgccattgttgcatcaaaagtagtttcttt |
45364664 |
T |
|
| Q |
418 |
tccttgcatgttcaaatccaactctttcaaattctgtgtaactggtttggttgaaattttatttcataaatcacaatgcttttatag |
504 |
Q |
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| T |
45364663 |
tccttgcatgttcaaatccaactctttcaaattctgtgtaactggtttggttgaaattttatttcataaatcacaatgcttttatag |
45364577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 18 - 504
Target Start/End: Complemental strand, 45383882 - 45383396
Alignment:
| Q |
18 |
cggtgaactaactttgactgttgcctattttctatttcaaaccagaaaaagaactaattattaatgatctacacatgaaaaattaaatgaattgttaata |
117 |
Q |
| |
|
|||| ||||||||||| |||||||| | |||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
45383882 |
cggtcaactaactttggttgttgcctttattctgcttcaaaccagaaaaagaactaattattaatgatctactcatgaacaattaaatgaattgttaata |
45383783 |
T |
|
| Q |
118 |
ctttagatcataataaacatcaaaacctaatcacccccaggaagctaaatagtgctgcaattacaactta-gagttttcaaagaaaggcgtttaagaaaa |
216 |
Q |
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|||||||||||| ||||||||||||||||||||| | | |||||||||||||||||||||| ||||||| |||||||||||||| | ||||||||||| |
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| T |
45383782 |
ctttagatcatacgaaacatcaaaacctaatcacctc-atgaagctaaatagtgctgcaattgcaacttaagagttttcaaagaattgtgtttaagaaaa |
45383684 |
T |
|
| Q |
217 |
agcaaatgcagtttgcaaggtgataagcttcctaggagggtgttaattgttaaactgttagctgtaggcttaaagcaaagaagctttttattggagtttg |
316 |
Q |
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| T |
45383683 |
agcaaatgcagtttgcaaggtgataagcttcctaggagggtgttaattgttaaactgttagctgtaggcttaaagcaaagaagctttttattggagtttg |
45383584 |
T |
|
| Q |
317 |
attagatttgtggtatatcttcttttgaagtggaaatttctttggcctcctaacgactagcatactgtttttgccattgttgcatcaaaagtagtttctt |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45383583 |
attagatttgtggtatatcttcttttgaagtggaaatttctttggcctcctaataactagcatactgtttttgccattgttgcatcaaaagtagtttctt |
45383484 |
T |
|
| Q |
417 |
ttccttgcatgttcaaatccaactctttcaaattctgtgtaactggtttggttgaaattttatttcataaatcacaatgcttttatag |
504 |
Q |
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| T |
45383483 |
ttccttgcatgttcaaatccaactctttcaaattctgtgtaactggtttggttgaaattttatttcataaatcacaatgcttttatag |
45383396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 206 - 504
Target Start/End: Complemental strand, 45376115 - 45375817
Alignment:
| Q |
206 |
gtttaagaaaaagcaaatgcagtttgcaaggtgataagcttcctaggagggtgttaattgttaaactgttagctgtaggcttaaagcaaagaagcttttt |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45376115 |
gtttaagaaaaagcaaatgcagtttgcaaggtgataagcttcctaggagggtgttaattgttaaactgttagctgtaggcttaaagcaaagaagcttttt |
45376016 |
T |
|
| Q |
306 |
attggagtttgattagatttgtggtatatcttcttttgaagtggaaatttctttggcctcctaacgactagcatactgtttttgccattgttgcatcaaa |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
45376015 |
attggagtttgattagatttgtggtatatcttcttttgaagtggaaatttctttggcctcctaataactagcatactgtttttgccattgttgcatcaaa |
45375916 |
T |
|
| Q |
406 |
agtagtttcttttccttgcatgttcaaatccaactctttcaaattctgtgtaactggtttggttgaaattttatttcataaatcacaatgcttttatag |
504 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45375915 |
agtagtttcttttccttgcatgttcaaatccaactctttcaaattctgtgtaactggtttggttgaaattttatttcataaatcacaatgcttttatag |
45375817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 372 - 504
Target Start/End: Complemental strand, 45374919 - 45374787
Alignment:
| Q |
372 |
actagcatactgtttttgccattgttgcatcaaaagtagtttcttttccttgcatgttcaaatccaactctttcaaattctgtgtaactggtttggttga |
471 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
45374919 |
actagcatactgtttttgccattgttgcatcaaaagtagtttcttttccctgcatgttcaaatccaacttgttcaaattctgtgtaactggtttggttga |
45374820 |
T |
|
| Q |
472 |
aattttatttcataaatcacaatgcttttatag |
504 |
Q |
| |
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|||||||||||| |||||| ||||||||||||| |
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| T |
45374819 |
aattttatttcacaaatcataatgcttttatag |
45374787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 177 - 278
Target Start/End: Original strand, 24324183 - 24324281
Alignment:
| Q |
177 |
attacaacttagagttttcaaagaaaggcgtttaagaaaaagcaaatgcagtttgcaaggtgataagcttcctaggagggtgttaattgttaaactgtta |
276 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |||| ||||||| |||||| ||| |||||||| ||| || ||||| ||||||| | ||||| |
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| T |
24324183 |
attacaacttagagttttcaaagaaaggagtttaag-aaaataaaatgcattttgcatggtaataagctt--tagaagagtgttgattgttatagtgtta |
24324279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 312 - 360
Target Start/End: Original strand, 24341887 - 24341936
Alignment:
| Q |
312 |
gtttgattagatttgtggtatatcttc-ttttgaagtggaaatttctttg |
360 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
24341887 |
gtttgattagatttgtggtatatcttctttttgaagtggaaatttatttg |
24341936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 312 - 360
Target Start/End: Original strand, 24354252 - 24354301
Alignment:
| Q |
312 |
gtttgattagatttgtggtatatcttc-ttttgaagtggaaatttctttg |
360 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
24354252 |
gtttgattagatttgtggtatatcttctttttgaagtggaaatttatttg |
24354301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 24311353 - 24311414
Alignment:
| Q |
80 |
aatgatctacacatgaaaaattaaatgaattgttaatactttagatcataataaacatcaaa |
141 |
Q |
| |
|
|||||||| ||||||| | ||||||||||| |||||||||||||||| || |||||||||| |
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| T |
24311353 |
aatgatctgcacatgaccatttaaatgaatttttaatactttagatcaaaagaaacatcaaa |
24311414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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