View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21535_low_2 (Length: 545)
Name: NF21535_low_2
Description: NF21535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21535_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 324
Target Start/End: Complemental strand, 45365057 - 45364757
Alignment:
| Q |
18 |
cggtgaactaactttgactgttgcctattttctatttcaaaccagaaaaagaactaattattaatgatctacacatgaaaaattaaatgaattgttaata |
117 |
Q |
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| T |
45365057 |
cggtgaactgactttgactgttgcctattttctgtttcaaaccaaaaaaagaactaattattaatgatctacacatgaaaaattaaatgaattgttaata |
45364958 |
T |
|
| Q |
118 |
ctttagatcataataaacatcaaaacctaatcacccccaggaagctaaatagtgctgcaattacaacttagagttttcaaagaaaggcgtttaagaaaaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
45364957 |
ctttagatcataataaacatcaaaacctaatcacccccaggaagctaaatagtgctgcaattaca------agttttcaaagaaaagcgtttaagaaaaa |
45364864 |
T |
|
| Q |
218 |
gcaaatgcagtttgcaaggtgataagcttcctaggagggtgttaattgttaaactgttagctgtaggcttaaagcaaagaagctttttattggagtttga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45364863 |
gcaaatgcagtttgcaaggtgataagcttcctaggagggtgttaattgttaaactgttagctgtaggcttaaagcaaagaagctttttattggagtttga |
45364764 |
T |
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| Q |
318 |
ttagatt |
324 |
Q |
| |
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||||||| |
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| T |
45364763 |
ttagatt |
45364757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 324
Target Start/End: Complemental strand, 45383882 - 45383576
Alignment:
| Q |
18 |
cggtgaactaactttgactgttgcctattttctatttcaaaccagaaaaagaactaattattaatgatctacacatgaaaaattaaatgaattgttaata |
117 |
Q |
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|||| ||||||||||| |||||||| | |||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
45383882 |
cggtcaactaactttggttgttgcctttattctgcttcaaaccagaaaaagaactaattattaatgatctactcatgaacaattaaatgaattgttaata |
45383783 |
T |
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| Q |
118 |
ctttagatcataataaacatcaaaacctaatcacccccaggaagctaaatagtgctgcaattacaactta-gagttttcaaagaaaggcgtttaagaaaa |
216 |
Q |
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|||||||||||| ||||||||||||||||||||| | | |||||||||||||||||||||| ||||||| |||||||||||||| | ||||||||||| |
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| T |
45383782 |
ctttagatcatacgaaacatcaaaacctaatcacctc-atgaagctaaatagtgctgcaattgcaacttaagagttttcaaagaattgtgtttaagaaaa |
45383684 |
T |
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| Q |
217 |
agcaaatgcagtttgcaaggtgataagcttcctaggagggtgttaattgttaaactgttagctgtaggcttaaagcaaagaagctttttattggagtttg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45383683 |
agcaaatgcagtttgcaaggtgataagcttcctaggagggtgttaattgttaaactgttagctgtaggcttaaagcaaagaagctttttattggagtttg |
45383584 |
T |
|
| Q |
317 |
attagatt |
324 |
Q |
| |
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|||||||| |
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| T |
45383583 |
attagatt |
45383576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 206 - 324
Target Start/End: Complemental strand, 45376115 - 45375997
Alignment:
| Q |
206 |
gtttaagaaaaagcaaatgcagtttgcaaggtgataagcttcctaggagggtgttaattgttaaactgttagctgtaggcttaaagcaaagaagcttttt |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45376115 |
gtttaagaaaaagcaaatgcagtttgcaaggtgataagcttcctaggagggtgttaattgttaaactgttagctgtaggcttaaagcaaagaagcttttt |
45376016 |
T |
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| Q |
306 |
attggagtttgattagatt |
324 |
Q |
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||||||||||||||||||| |
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| T |
45376015 |
attggagtttgattagatt |
45375997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 177 - 278
Target Start/End: Original strand, 24324183 - 24324281
Alignment:
| Q |
177 |
attacaacttagagttttcaaagaaaggcgtttaagaaaaagcaaatgcagtttgcaaggtgataagcttcctaggagggtgttaattgttaaactgtta |
276 |
Q |
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|||||||||||||||||||||||||||| ||||||| |||| ||||||| |||||| ||| |||||||| ||| || ||||| ||||||| | ||||| |
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| T |
24324183 |
attacaacttagagttttcaaagaaaggagtttaag-aaaataaaatgcattttgcatggtaataagctt--tagaagagtgttgattgttatagtgtta |
24324279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 24311353 - 24311414
Alignment:
| Q |
80 |
aatgatctacacatgaaaaattaaatgaattgttaatactttagatcataataaacatcaaa |
141 |
Q |
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|||||||| ||||||| | ||||||||||| |||||||||||||||| || |||||||||| |
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| T |
24311353 |
aatgatctgcacatgaccatttaaatgaatttttaatactttagatcaaaagaaacatcaaa |
24311414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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