View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21535_low_3 (Length: 427)
Name: NF21535_low_3
Description: NF21535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21535_low_3 |
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| [»] chr8 (1 HSPs) |
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| [»] chr3 (3 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 427
Target Start/End: Complemental strand, 35154146 - 35153726
Alignment:
| Q |
18 |
atactaataagtgctaacaattaatttcaaattacttgaatataccatggcaaattcaatacagagaaaggaagttgtttatgcagactatgaattgaga |
117 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35154146 |
atactaataagtgctaactattaatttcaaattacttgaatataccatggcacattcaatacggagaaaggaagttgtttatgcagactatgaattgaga |
35154047 |
T |
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| Q |
118 |
gcagacaaagtgaaagagtttaacaacttgacattcgaaagnnnnnnnnnnnnnnnnnnnccaccacaagattcatcaatgttttatannnnnnnnagtt |
217 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||| |||| |
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| T |
35154046 |
gcagacaaagtgaaagagtttaacaacttgacatttgaaagagaaaaaaaaataaaaaaaccaccacaagattcatcaacgttttatattttttttagtt |
35153947 |
T |
|
| Q |
218 |
gt-nnnnnnnccaacaaatttgtgagtttttgatgttcttggtgtggttgagctaccaatgatgttgcttatttgtgttaatcatcttgtctcta----- |
311 |
Q |
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| T |
35153946 |
ctaaaaaaaaccaacaaatttgtgagtttttgatgttcttggtgtggttgagctatcaatgatgttgcttatttgtgttaatcatcttgtctctatgtat |
35153847 |
T |
|
| Q |
312 |
-----ttgtttgaattgattgcatctggatacgtgattatgatttatggcagctgaagttactgagcaatgggtgcctatcaaagttctttttggagtac |
406 |
Q |
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| T |
35153846 |
ttagtttgtttgaattgattgcatctggacacgtgattatgatttatggcagctgaagttactgagcaatgggtgcctatcaaagttctttttggagtac |
35153747 |
T |
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| Q |
407 |
gatgaaccttgatttgagttt |
427 |
Q |
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| T |
35153746 |
gatgaaccttgatttgagttt |
35153726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 160; Significance: 4e-85; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 227 - 427
Target Start/End: Original strand, 53981072 - 53981282
Alignment:
| Q |
227 |
ccaacaaatttgtgagtttttgatgttcttggtgtggttgagctaccaatgatgttgcttatttgtgttaatcatcttgtctctat----------tgtt |
316 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
53981072 |
ccaataaatttgtgagtttttgatgttcttggtgtggttgagctatcaatgatgttgcttatttgtgttaatcatcttgtctctatatatttagtttgtt |
53981171 |
T |
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| Q |
317 |
tgaattgattgcatctggatacgtgattatgatttatggcagctgaagttactgagcaatgggtgcctatcaaagttctttttggagtacgatgaacctt |
416 |
Q |
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| T |
53981172 |
tgaattgattgcatctggacacgtggttatgatttatggcagctgaagttactgagcaatgggtgcctatcaaagttctttttggagtacgatgaacctt |
53981271 |
T |
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| Q |
417 |
gatttgagttt |
427 |
Q |
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| T |
53981272 |
gatttgagttt |
53981282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 53980862 - 53980996
Alignment:
| Q |
18 |
atactaataagtgctaacaattaatttcaaattacttgaatataccatggcaaattcaatacagagaaaggaagttgtttatgcagactatgaattgaga |
117 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
53980862 |
atactaataagtgctaactattaatttcaaattacttgaatataccatggcacattcaatacggagaaaggaagttgtttatgcagactatgaattgaga |
53980961 |
T |
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| Q |
118 |
gcagacaaagtgaaagagtttaacaacttgacatt |
152 |
Q |
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| T |
53980962 |
acagacaaagtgaaagagtttaacaacttgacatt |
53980996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 393 - 427
Target Start/End: Complemental strand, 53975566 - 53975532
Alignment:
| Q |
393 |
tctttttggagtacgatgaaccttgatttgagttt |
427 |
Q |
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| T |
53975566 |
tctttttggagtacgatgagccttgatttgagttt |
53975532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 339 - 427
Target Start/End: Original strand, 2523214 - 2523302
Alignment:
| Q |
339 |
gtgattatgatttatggcagctgaagttactgagcaatgggtgcctatcaaagttctttttggagtacgatgaaccttgatttgagttt |
427 |
Q |
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||||||| ||||||||| |||||||| | || |||||||||||||||| |||||| ||||||||||| |||| ||||| |||||||| |
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| T |
2523214 |
gtgattaggatttatggtagctgaagctcctaagcaatgggtgcctattaaagttttttttggagtaaaatgagccttggcttgagttt |
2523302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 142
Target Start/End: Complemental strand, 37876257 - 37876208
Alignment:
| Q |
93 |
tgtttatgcagactatgaattgagagcagacaaagtgaaagagtttaaca |
142 |
Q |
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||||| |||| |||||||| ||||| ||||||||||||||||||||||| |
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| T |
37876257 |
tgtttctgcaaactatgaaccgagagtagacaaagtgaaagagtttaaca |
37876208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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