View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21536_high_10 (Length: 319)
Name: NF21536_high_10
Description: NF21536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21536_high_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 10 - 291
Target Start/End: Original strand, 50408055 - 50408352
Alignment:
| Q |
10 |
aagaatattgggtcaggaattgaattgtgtaggagcaagttgtttcagattgtctttcattattatcactgcagctactttgtttggtgccattatttca |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50408055 |
aagaaaattgggtcaggaattgaattgtgtaggagcaagttgtttcagattgtctttcattattatcactgcagctactttgtttggtgccattatttca |
50408154 |
T |
|
| Q |
110 |
cttattttagtggccagaacaattaagttttataaaggtgatatatacaagaggtaccgatcagagcaggttgaagttgaaggagctacggctgagatga |
209 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50408155 |
cttattttagtggccagaacaaataagttttataaaggtgatatatacaagaggtaccgatcagagcaggttgaagttgaaggagctacggctgagatga |
50408254 |
T |
|
| Q |
210 |
cggtggtccaaaatgacggcaagagaggaaaggaa------------acagtgatg----tgattcattgatgtataggggttgaatgttgaatgttg |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50408255 |
cggtggtccaaaatgacggcaagagaggaaaggaagaagcaaaagctacagtgatgtgattgattcattgatgtataggggttgaatgttgaatgttg |
50408352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 62 - 162
Target Start/End: Original strand, 50386078 - 50386178
Alignment:
| Q |
62 |
tctttcattattatcactgcagctactttgtttggtgccattatttcacttattttagtggccagaacaattaagttttataaaggtgatatatacaaga |
161 |
Q |
| |
|
||||||||||||||||| || || || || |||||||| || ||||||||||||| ||||| || || | |||||||| |||||||| |||||||||| |
|
|
| T |
50386078 |
tctttcattattatcacagctgcaacattttttggtgctgttgtttcacttattttggtggctaggaccagaaagttttacaaaggtgacatatacaaga |
50386177 |
T |
|
| Q |
162 |
g |
162 |
Q |
| |
|
| |
|
|
| T |
50386178 |
g |
50386178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 166
Target Start/End: Original strand, 50394484 - 50394601
Alignment:
| Q |
49 |
ttgtttcagattgtctttcattattatcactgcagctactttgtttggtgccattatttcacttattttagtggccagaacaattaagttttataaaggt |
148 |
Q |
| |
|
|||||||| || |||||||||||||| || || || || || |||||||| || ||||||||||||| ||| | || || | |||||||| |||||| |
|
|
| T |
50394484 |
ttgtttcaagttatctttcattattattacagctgcaacattttttggtgctgttgtttcacttattttggtgtctaggactagaaagttttacaaaggt |
50394583 |
T |
|
| Q |
149 |
gatatatacaagaggtac |
166 |
Q |
| |
|
|| ||||||||||||||| |
|
|
| T |
50394584 |
gacatatacaagaggtac |
50394601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 10 - 150
Target Start/End: Complemental strand, 41638002 - 41637862
Alignment:
| Q |
10 |
aagaatattgggtcaggaattgaattgtgtaggagcaagttgtttcagattgtctttcattattatcactgcagctactttgtttggtgccattatttca |
109 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
41638002 |
aagaaaattgggtcaggaattgaattgtgcaggagcaagttgtttcaaattgtctttcattattatcactgtagctactttgtttggtgccattatttca |
41637903 |
T |
|
| Q |
110 |
cttattttagtggccagaacaattaagttttataaaggtga |
150 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
41637902 |
cttattttagtggctagaacaattaagttttataaacgtga |
41637862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 36 - 172
Target Start/End: Complemental strand, 39628197 - 39628061
Alignment:
| Q |
36 |
gtgtaggagcaagttgtttcagattgtctttcattattatcactgcagctactttgtttggtgccattatttcacttattttagtggccagaacaattaa |
135 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||| |||||||||||||| |||||||||| |||||||||| | ||||| || | ||||||||||| |
|
|
| T |
39628197 |
gtgtgggagcaagttgtttcaaattgtctttcatgtctatcactgcagctaacttgtttggtgtcattatttcagtaattttgttgactagaacaattaa |
39628098 |
T |
|
| Q |
136 |
gttttataaaggtgatatatacaagaggtaccgatca |
172 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |
|
|
| T |
39628097 |
gttttataaacgtgatatatacaagaggtaccgatca |
39628061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 134 - 226
Target Start/End: Complemental strand, 41637847 - 41637755
Alignment:
| Q |
134 |
aagttttataaaggtgatatatacaagaggtaccgatcagagcaggttgaagttgaaggagctacggctgagatgacggtggtccaaaatgac |
226 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
41637847 |
aagttttataaacgtgatatatacaagaggtaccgatcagagcaggtagaagttgaaggagcttcggatgagatgacggtggtccaaaatgac |
41637755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 30 - 129
Target Start/End: Original strand, 41638119 - 41638221
Alignment:
| Q |
30 |
tgaattgtgtaggagcaagttgtttcagattgtctttcattattatca---ctgcagctactttgtttggtgccattatttcacttattttagtggccag |
126 |
Q |
| |
|
|||||||||||||| || ||||||||| ||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41638119 |
tgaattgtgtaggaacacgttgtttcaaattgtctttcattatcatcatcactctggctactttgtttggtgccattatttcacttattttagtggccag |
41638218 |
T |
|
| Q |
127 |
aac |
129 |
Q |
| |
|
||| |
|
|
| T |
41638219 |
aac |
41638221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 41638631 - 41638695
Alignment:
| Q |
136 |
gttttataaaggtgatatatacaagaggtaccgatcagagcaggttgaagttgaaggagctacgg |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
41638631 |
gttttataaacgtgatatatacaagaggtaccggtcagagcaggtagaagttgaaggagctacgg |
41638695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University