View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21536_high_2 (Length: 549)
Name: NF21536_high_2
Description: NF21536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21536_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 8 - 326
Target Start/End: Complemental strand, 4712669 - 4712351
Alignment:
| Q |
8 |
tttgctacgattccctatttgatttttattcacattacgcggtggtgtgaagagaaatatatagtggttaggaaaattcgcgaacaaattcaaaaactta |
107 |
Q |
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| T |
4712669 |
tttgctacgattccctatttgatttttattcacattacgcggtggtgtgaagagaaatatatagtggttaggaaaattcgcgaacaaattcaaaaactta |
4712570 |
T |
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| Q |
108 |
gggtttttgattttggattattgcgtttgaattcaattttatgtgtacacaaacgcacgttctggtgaagtagaagcaacacatgcgagattctctgtga |
207 |
Q |
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| T |
4712569 |
gggtttttgattttggattattgcgtttgaattcaattttatgtgtacacaaacgcacgttctggtgaagtagaagcaacacatgcgagattctctgtga |
4712470 |
T |
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| Q |
208 |
attttaacttttaagcctcactttcttcttcgttttgctttttcattcagcattcgcttattcaactattcttttggttttgacttttatcgaagaattc |
307 |
Q |
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| T |
4712469 |
attttaacttttaagcctcactttcttcttcgttttgctttttcattcagcattcgcttattcaactactcttttggttttgacttttatcgaagaattc |
4712370 |
T |
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| Q |
308 |
ttcatccgtgcactggtac |
326 |
Q |
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| T |
4712369 |
ttcatccgtgcactggtac |
4712351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 391 - 533
Target Start/End: Complemental strand, 4712286 - 4712145
Alignment:
| Q |
391 |
aatcattgttttgatatatgctgtgtgaatttgaatctgtttcggttatgtttgttaatcttttcttgtttagagagataagtatataatttcaattttg |
490 |
Q |
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| T |
4712286 |
aatcattgttttgatatatgctgtgtgaatttgaatctgtttcggttatgtgtgttaatcttttcttgtttagagagataagtatataatttcaattttg |
4712187 |
T |
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| Q |
491 |
ttcaattatacttgttactgtagtttgatagtgatttgaactg |
533 |
Q |
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| T |
4712186 |
ttcaattatacttgttactgtag-ttgatagtgatttgaactg |
4712145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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