View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21536_high_4 (Length: 470)
Name: NF21536_high_4
Description: NF21536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21536_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 158 - 463
Target Start/End: Original strand, 31038010 - 31038318
Alignment:
| Q |
158 |
cgatttatgttagactgtttattgagccatataaaaggacaaacatgacacatgaatatatgtaaaagaccaaatgatttattgctatccataaggtcta |
257 |
Q |
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| T |
31038010 |
cgatttatgttagactgtttattgagccatataaaaggacaaacatgacacatgaatatatgtaaaagaccaaatgatttattgctatccataaagtcta |
31038109 |
T |
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| Q |
258 |
aataaaagacaatataaataaactgataaatgannnnnnnnnncgatatcttttttacatttaagag------agagagaaaatatgattaagtttctta |
351 |
Q |
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| T |
31038110 |
aataaaagacaatataaataaactgataaatgattttttt---cgatatcttttttacatttaagagagagagagagagagaatatgattaagtttctta |
31038206 |
T |
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| Q |
352 |
agtttgtttatggtatgatcattttgatttctctattttttgctgtaagggacgtaagcgctggtatgccatttctcgcattgttttaaactttttgctt |
451 |
Q |
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| T |
31038207 |
agtttgtttatggtatgatcattttgatttctctattttttgctgtaagggacgtaagcgctggtatgccatttctcacattgttttaaactttttgctt |
31038306 |
T |
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| Q |
452 |
tcccctttgcta |
463 |
Q |
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| T |
31038307 |
tcccctttgcta |
31038318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 31037868 - 31037957
Alignment:
| Q |
18 |
gatttcattaatcttattggctaatactgttatattgttgtgtttgggtttcctcaatctatcatgaaaa-gttataaaagaaattgtac |
106 |
Q |
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| T |
31037868 |
gatttcattaatcttattggctaatactgttatattgttgtgtttgggtttcctcaatctatcatgaaaattttataaaagacattgtac |
31037957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 331 - 419
Target Start/End: Original strand, 31027927 - 31028015
Alignment:
| Q |
331 |
aaaatatgattaagtttcttaagtttgtttatggtatgatcattttgatttctctattttttgctgtaagggacgtaagcgctggtatg |
419 |
Q |
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| T |
31027927 |
aaaatatgattaagtttctcaaatttttttatgctacgatcatcttgatttccatattttttgttgtaagggatgaaagctctggtatg |
31028015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 160 - 242
Target Start/End: Original strand, 31027765 - 31027847
Alignment:
| Q |
160 |
atttatgttagactgtttattgagccatataaaaggacaaacatgacacatgaatatatgtaaaagaccaaatgatttattgc |
242 |
Q |
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| T |
31027765 |
atttatgttagattttttattgagtgatattaagggacaaacatgacaaatgaatgtatgtaaaagacaaaatcatttcttgc |
31027847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 349 - 426
Target Start/End: Complemental strand, 27560636 - 27560559
Alignment:
| Q |
349 |
ttaagtttgtttatggtatgatcattttgatttctctattttttgctgtaagggacgtaagcgctggtatgccatttc |
426 |
Q |
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| T |
27560636 |
ttaagtttgtttatgctatgatcatatttatttttgtattttttgatgtaagtgatgtaatcgctggtaagccttttc |
27560559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 332 - 389
Target Start/End: Original strand, 4655972 - 4656029
Alignment:
| Q |
332 |
aaatatgattaagtttcttaagtttgtttatggtatgatcattttgatttctctattt |
389 |
Q |
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| T |
4655972 |
aaatatgactaagttttttaagtttgtttatactatgttcattttaatttctctattt |
4656029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 389
Target Start/End: Original strand, 4647527 - 4647584
Alignment:
| Q |
332 |
aaatatgattaagtttcttaagtttgtttatggtatgatcattttgatttctctattt |
389 |
Q |
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| T |
4647527 |
aaatatgaccaagttttttaagtttgtttatactatgttcattttaatttctctattt |
4647584 |
T |
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