View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21536_high_6 (Length: 373)
Name: NF21536_high_6
Description: NF21536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21536_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 32409422 - 32409066
Alignment:
| Q |
1 |
gctcatcgattttcacttttcctatatgtgcaaattatgttaggcatttgaacttcatttcttactcctgcacaaacataagcaatctggcatatggatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
32409422 |
gctcatcgattttcacttttcctatatgtgcaaattatgttaggcatttgaacttcatttcttactcctgcacaaacataagcaatctgtcatatggatt |
32409323 |
T |
|
| Q |
101 |
gaattatatttacacttgtagattcaaatgtgtgcacgcagactcataaagacacagatgtaaatcatatcatagtactattgttagactatac--ttat |
198 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
32409322 |
gaattatatttacacttatagattcaaatgtgtgcatgcagactcataaagacacagatgtaaatcatatcatagtactattgttagactataccagtat |
32409223 |
T |
|
| Q |
199 |
atttgtatttggatctattatttcttgtggcttctagtattctcaactttccacaaggacaaatcagcatcaggtacctacctctattcccatgtgtgct |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
32409222 |
atttgtatttggatctattatttcttgtggcttctagtattctcaactttccacaaggacaaatcagcatcaggtacctacctctattcacatgtgtgct |
32409123 |
T |
|
| Q |
299 |
cataaatcattacaacaaaacaatgtcctacatacatataccctgctcctaccttgt |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32409122 |
cataaatcattacaacaaaacaatgtcctacatacatataccctgctcctaccttgt |
32409066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 272 - 353
Target Start/End: Original strand, 36163198 - 36163279
Alignment:
| Q |
272 |
gtacctacctctattcccatgtgtgctcataaatcattacaacaaaacaatgtcctacatacatataccctgctcctacctt |
353 |
Q |
| |
|
||||| |||| ||||| ||||||||| ||| |||||| ||||||||||||| |||| |||||| ||| ||||||||||||| |
|
|
| T |
36163198 |
gtacccacctatattcacatgtgtgcccattaatcatcacaacaaaacaatatcctccatacacatatactgctcctacctt |
36163279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University