View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21536_high_8 (Length: 340)
Name: NF21536_high_8
Description: NF21536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21536_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 239 - 335
Target Start/End: Original strand, 47157504 - 47157596
Alignment:
| Q |
239 |
tcgagttgaacgtgggtaagaaatatttgcaacttcaaattaaagagtctcacgaataaatcattttcccaaaaatatatagaaggagttcatctca |
335 |
Q |
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| T |
47157504 |
tcgagttgaacgtgggtaagaaatatttgcaacttcaaattaaagagtctcacgaataaatcattttcccaaaa----atagaaggagttcatctca |
47157596 |
T |
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Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 17 - 158
Target Start/End: Original strand, 47156492 - 47156633
Alignment:
| Q |
17 |
tctagtaaaaaagagacatgtcctcgactcttgaaagattcaaattcctaccctactaatacattnnnnnnnnnnnnnnnnnnnnnnnncatttgtaaat |
116 |
Q |
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| T |
47156492 |
tctagtgaaaaagagacatgtcctcgactcttaaaagattcaaattcctaccctgctaatacatttaaaaaataataaataaatatatacatttgtaaat |
47156591 |
T |
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| Q |
117 |
tgtaagtgttttttaaactctaactgcttaaaatttgcaagt |
158 |
Q |
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| T |
47156592 |
tgtaagtgttttttaaactctaactgcttaaaatttgtaagt |
47156633 |
T |
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