View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21536_low_1 (Length: 551)
Name: NF21536_low_1
Description: NF21536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21536_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 1e-73; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 389 - 537
Target Start/End: Complemental strand, 47155970 - 47155822
Alignment:
| Q |
389 |
ataactagtgtcatatgtcatacctatagtcagtttcctttcatcaatattgtggatgattagtttttattaaatcaatagacaaatatctttctgaaga |
488 |
Q |
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| T |
47155970 |
ataactagtgtcatatgtcatacctatagtcagtttcctttcatcaatattgtgcatgattagtttttcttaaatcaatagacaaatatctttctgaaga |
47155871 |
T |
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| Q |
489 |
aatgaggatatatctatctatttggaatggagaacatgaaccatggaag |
537 |
Q |
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| T |
47155870 |
aatgaggatatatctatctatttggaatggagaacatgaaccatggaag |
47155822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 47156507 - 47156352
Alignment:
| Q |
1 |
tctcttttttactagaccaattctttagagtttctaaatcattttttattcaaaatacaattgaaataacaaataagtnnnnnnnnnnttatatactttt |
100 |
Q |
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| T |
47156507 |
tctctttttcactagactaattctttagagtttctaaatcattttttattcaaaatacaattgaaataacaaataagt-aaacaaaaattatatactttt |
47156409 |
T |
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| Q |
101 |
taaatattataagagaaattagtgaataaaactatccatcgagttatgcttatatac |
157 |
Q |
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| T |
47156408 |
taaatattataagagaaattagtgaataaaactatccatcaagttatgcttatatac |
47156352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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