View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21536_low_13 (Length: 256)
Name: NF21536_low_13
Description: NF21536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21536_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 34578984 - 34578767
Alignment:
| Q |
19 |
gtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggttaaggatattcaacttgctcgtcgtatccgtggtgaacgtgcttag |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34578984 |
gtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggtgaaggatattcaacttgctcgtcgtatccgtggtgaacgagcttag |
34578885 |
T |
|
| Q |
119 |
ggttatagactagttactattctggtattggaatgatttcagggttttgatttag----nnnnnnnnatcagttatctcttatgctgccttaaccatggt |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| || |||||||||| |
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| T |
34578884 |
ggttatagactagttactattctggtattggaatgatttcagggttttgatttagttttttttttttatcagttatcttttatgcttccgtaaccatggt |
34578785 |
T |
|
| Q |
215 |
gatcatgtttagggttac |
232 |
Q |
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|
|||||||||||||||||| |
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| T |
34578784 |
gatcatgtttagggttac |
34578767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 19 - 154
Target Start/End: Complemental strand, 34584733 - 34584598
Alignment:
| Q |
19 |
gtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggttaaggatattcaacttgctcgtcgtatccgtggtgaacgtgcttag |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34584733 |
gtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggtgaaggatattcaacttgctcgtcgtatccgtggtgaacgagcttag |
34584634 |
T |
|
| Q |
119 |
ggttatagactagttactattctggtattggaatga |
154 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
34584633 |
ggttatagactagttactattctggtattggaatga |
34584598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 134
Target Start/End: Complemental strand, 34571516 - 34571401
Alignment:
| Q |
19 |
gtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggttaaggatattcaacttgctcgtcgtatccgtggtgaacgtgcttag |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | ||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
34571516 |
gtttgaggataccaatttgtgtgcaattcatgctaagagggttaccattatgcctaaggatattcaacttgctcgccgtatccgtggtgaacgtgcttag |
34571417 |
T |
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| Q |
119 |
ggttatagactagtta |
134 |
Q |
| |
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|| ||| || |||||| |
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| T |
34571416 |
ggctatggattagtta |
34571401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 34562722 - 34562599
Alignment:
| Q |
19 |
gtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggttaaggatattcaacttgctcgtcgtatccgtggtgaa---cgtgct |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | ||| ||||| ||||||||||||||||||| | ||||||||||||||| |||| | |
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| T |
34562722 |
gtttgaggataccaatttgtgtgcaattcatgctaagagggttaccattatgcctaaggatattcaacttgcttgccgtatccgtggtgaacgtcgtggt |
34562623 |
T |
|
| Q |
116 |
tagggttatagactagttactatt |
139 |
Q |
| |
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||||||||| ||||||||| |||| |
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| T |
34562622 |
tagggttattgactagttagtatt |
34562599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 13576406 - 13576477
Alignment:
| Q |
19 |
gtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggttaaggatattcaacttgc |
90 |
Q |
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|||||||||||| ||| | ||||| ||||||||||||||| | || ||||| |||||||||||||||||| |
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| T |
13576406 |
gtttgaggatacgaatctttgtgctattcatgctaagagggttactattatgcctaaggatattcaacttgc |
13576477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 25865758 - 25865863
Alignment:
| Q |
19 |
gtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggttaaggatattcaacttgctcgtcgtatccgtggtgaacgtgcttag |
118 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| | || ||||| ||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
25865758 |
gtttgaggatactaatttgtgtgcaattcatgctaagagggtaacgattatgccaaaggatattcagcttgctcgtcgtattcgtggtgaacgtgcttag |
25865857 |
T |
|
| Q |
119 |
ggttat |
124 |
Q |
| |
|
|||||| |
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|
| T |
25865858 |
ggttat |
25865863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 41944002 - 41944103
Alignment:
| Q |
19 |
gtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggttaaggatattcaacttgctcgtcgtatccgtggtgaacgtgcttag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | || ||||| ||||| ||||||||||| || ||||| |||||||||||||||||| |
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| T |
41944002 |
gtttgaggataccaatttgtgtgcaattcatgctaagagggttacaattatgccaaaggacattcaacttgcacgccgtattcgtggtgaacgtgcttag |
41944101 |
T |
|
| Q |
119 |
gg |
120 |
Q |
| |
|
|| |
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|
| T |
41944102 |
gg |
41944103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 44344013 - 44344110
Alignment:
| Q |
19 |
gtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggttaaggatattcaacttgctcgtcgtatccgtggtgaacgtgcttag |
118 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| | || ||||| ||||||||||| || ||||||||||||||||||||||| |
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| T |
44344013 |
gtttgaggataccaatttgtgtgctattcatgctaagagggtgacgattatgcccaaggatattcagct--------gtatccgtggtgaacgtgcttag |
44344104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 7594201 - 7594101
Alignment:
| Q |
19 |
gtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggttaaggatattcaacttgctcgtcgtatccgtggtgaacgtgcttag |
118 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||| | || ||||| ||||||||||| ||||||||||| || |||||||||||||||||| |
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| T |
7594201 |
gtttgaggacaccaatctgtgtgcaattcatgctaagagggtgacaattatgccaaaggatattcagcttgctcgtcgcattcgtggtgaacgtgcttag |
7594102 |
T |
|
| Q |
119 |
g |
119 |
Q |
| |
|
| |
|
|
| T |
7594101 |
g |
7594101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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