View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21536_low_5 (Length: 451)
Name: NF21536_low_5
Description: NF21536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21536_low_5 |
 | |
|
| [»] scaffold0115 (2 HSPs) |
| | |
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| [»] scaffold0406 (1 HSPs) |
| | |
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| [»] scaffold0012 (2 HSPs) |
| | |
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| [»] scaffold0068 (1 HSPs) |
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| [»] scaffold0006 (4 HSPs) |
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Alignment Details
Target: scaffold0115 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 11 - 436
Target Start/End: Original strand, 4758 - 5181
Alignment:
| Q |
11 |
catcatcagcgtaaatatttctaaatttacccaaaaattctataaccaaagaaagatttnnnnnnnnncccccaaatagagtattcaactgattaaactc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | || ||||||||||||||||||||||||||| |
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|
| T |
4758 |
catcatcagcgtaaatatttctaaatttacccaaaa-ttctataaccaaagaaagatttaaaaaaaaactcc-aaatagagtattcaactgattaaactc |
4855 |
T |
|
| Q |
111 |
aaatattggaggtacgcatgcaaatcctttcttctctgaaacaatttccttcatgctcccacacaatgtcaaactaagtatttctagatgtgaacagcaa |
210 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
4856 |
aaatatgggaggtacgcatgcaaatcctttcttctctgaaagaatttccttcatgcgcccacacaatgtcaaactaagtatttctagatgtgaacaacaa |
4955 |
T |
|
| Q |
211 |
gaggccacagaaagcgtaaacagataatctatgcttccacaatttacaagagatacattttctagattatgaaaactaagaatcccttgaggatccacac |
310 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4956 |
gaggccacagaaagcggaaacagataatctatgcttccacaatttacaagagatacattttctagattatgaaaactaagaatcctttgaggatccacac |
5055 |
T |
|
| Q |
311 |
tacatatatttttcagctttggcatttcactcaaagtgatttctttcagatttgttgcatcctctttacttccccttttcattggaatcaaatatctctt |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5056 |
tacatatatttttcagctttggcatttcactcaaagtgatttctttcagatttgttgcatcctctttacttccccttttcattggaatcaaatatctctt |
5155 |
T |
|
| Q |
411 |
ccactgaagcacaatttgtaatatct |
436 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
5156 |
ccactgaagcacaatttgtaatatct |
5181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115; HSP #2
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 11 - 436
Target Start/End: Original strand, 12498 - 12921
Alignment:
| Q |
11 |
catcatcagcgtaaatatttctaaatttacccaaaaattctataaccaaagaaagatttnnnnnnnnncccccaaatagagtattcaactgattaaactc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | || ||||||||||||||||||||||||||| |
|
|
| T |
12498 |
catcatcagcgtaaatatttctaaatttacccaaaa-ttctataaccaaagaaagatttaaaaaaaaactcc-aaatagagtattcaactgattaaactc |
12595 |
T |
|
| Q |
111 |
aaatattggaggtacgcatgcaaatcctttcttctctgaaacaatttccttcatgctcccacacaatgtcaaactaagtatttctagatgtgaacagcaa |
210 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
12596 |
aaatatgggaggtacgcatgcaaatcctttcttctctgaaagaatttccttcatgcgcccacacaatgtcaaactaagtatttctagatgtgaacaacaa |
12695 |
T |
|
| Q |
211 |
gaggccacagaaagcgtaaacagataatctatgcttccacaatttacaagagatacattttctagattatgaaaactaagaatcccttgaggatccacac |
310 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
12696 |
gaggccacagaaagcggaaacagataatctatgcttccacaatttacaagagatacattttctagattatgaaaactaagaatcctttgaggatccacac |
12795 |
T |
|
| Q |
311 |
tacatatatttttcagctttggcatttcactcaaagtgatttctttcagatttgttgcatcctctttacttccccttttcattggaatcaaatatctctt |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12796 |
tacatatatttttcagctttggcatttcactcaaagtgatttctttcagatttgttgcatcctctttacttccccttttcattggaatcaaatatctctt |
12895 |
T |
|
| Q |
411 |
ccactgaagcacaatttgtaatatct |
436 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
12896 |
ccactgaagcacaatttgtaatatct |
12921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 135; Significance: 3e-70; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 134 - 436
Target Start/End: Original strand, 19344395 - 19344705
Alignment:
| Q |
134 |
atcctttcttctctgaaacaatttccttcatgctcccacacaatgtcaaactaagtatttctagatgtgaacagcaaga---ggccacagaaagcgtaaa |
230 |
Q |
| |
|
||||||||||| ||| |||||||||||||||| || ||||| || |||| ||||||||| |||||||| |||||| | ||| ||||||||| ||| |
|
|
| T |
19344395 |
atcctttcttcactgcaacaatttccttcatgttctcacacgataacaaattaagtattttaagatgtgagcagcaacaaatggctacagaaagcagaaa |
19344494 |
T |
|
| Q |
231 |
cagataatctatgcttccacaatttacaagagatacattttctagattatgaaaactaagaatcccttgaggatccacactacatatatttttcagcttt |
330 |
Q |
| |
|
||||| || ||||||||||||| | | | |||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||| |||||| |
|
|
| T |
19344495 |
tagatattccatgcttccacaatcatctacatctacattttctagattatgaaaactaagaatcccttgaggatccatagtccatatattttttagcttt |
19344594 |
T |
|
| Q |
331 |
ggcatttcactcaaagtgatttctttcagatttgttgcatcctctttacttccccttttcattggaa------tcaaatatctcttccactgaagcacaa |
424 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||| |||||||||||| |
|
|
| T |
19344595 |
ggcattttactcaaagtgatttctttcagatttgttgcatcctctttactt-cccttttcagtggaattcaattcaaatatctctttcactgaagcacag |
19344693 |
T |
|
| Q |
425 |
tttgtaatatct |
436 |
Q |
| |
|
|||||||||||| |
|
|
| T |
19344694 |
tttgtaatatct |
19344705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 325
Target Start/End: Complemental strand, 13670889 - 13670828
Alignment:
| Q |
264 |
tacattttctagattatgaaaactaagaatcccttgaggatccacactacatatatttttca |
325 |
Q |
| |
|
||||||| |||||| |||||||||||||| ||||||||||| |||| ||||| ||||||| |
|
|
| T |
13670889 |
tacatttattagattttgaaaactaagaattccttgaggatcttcactccatatctttttca |
13670828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 329
Target Start/End: Original strand, 19138033 - 19138098
Alignment:
| Q |
264 |
tacattttctagattatgaaaactaagaatcccttgaggatccacactacatatatttttcagctt |
329 |
Q |
| |
|
||||||| |||||| |||||||||||||| ||||||||||| ||| ||||| ||||||||||| |
|
|
| T |
19138033 |
tacatttattagattttgaaaactaagaattccttgaggatctctactccatatctttttcagctt |
19138098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 325
Target Start/End: Complemental strand, 13655476 - 13655424
Alignment:
| Q |
273 |
tagattatgaaaactaagaatcccttgaggatccacactacatatatttttca |
325 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||| |||| ||||| ||||||| |
|
|
| T |
13655476 |
tagattttgaaaactaagaattccttgaggatctccactccatatctttttca |
13655424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 329
Target Start/End: Complemental strand, 13685126 - 13685070
Alignment:
| Q |
273 |
tagattatgaaaactaagaatcccttgaggatccacactacatatatttttcagctt |
329 |
Q |
| |
|
|||||| |||||||||||||| |||| |||||| |||| ||||| ||||||||||| |
|
|
| T |
13685126 |
tagattttgaaaactaagaattccttcaggatctccactccatatctttttcagctt |
13685070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 329
Target Start/End: Original strand, 15898936 - 15898992
Alignment:
| Q |
273 |
tagattatgaaaactaagaatcccttgaggatccacactacatatatttttcagctt |
329 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||| |||| ||||| || |||||||| |
|
|
| T |
15898936 |
tagattttgaaaactaagaattccttgaggatctccactccatatcttgttcagctt |
15898992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 325
Target Start/End: Complemental strand, 20477848 - 20477796
Alignment:
| Q |
273 |
tagattatgaaaactaagaatcccttgaggatccacactacatatatttttca |
325 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||| |||| ||||| ||||||| |
|
|
| T |
20477848 |
tagattttgaaaactaagaattccttgaggatctccactccatatctttttca |
20477796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 319 - 395
Target Start/End: Original strand, 328164 - 328240
Alignment:
| Q |
319 |
tttttcagctttggcatttcactcaaagtgatttctttcagatttgttgcatcctctttacttccccttttcattgg |
395 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
328164 |
tttttcagctttggcatttcagtcaaagtgatttaattcagatttgttgcatcctctttacttacccttttcattgg |
328240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0406 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0406
Description:
Target: scaffold0406; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 264 - 325
Target Start/End: Original strand, 7554 - 7615
Alignment:
| Q |
264 |
tacattttctagattatgaaaactaagaatcccttgaggatccacactacatatatttttca |
325 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||||| |||| ||||| ||||||| |
|
|
| T |
7554 |
tacatttattagattttgaaaactaagaatcccttgaggatcttcactccatatctttttca |
7615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 325
Target Start/End: Complemental strand, 116094 - 116042
Alignment:
| Q |
273 |
tagattatgaaaactaagaatcccttgaggatccacactacatatatttttca |
325 |
Q |
| |
|
|||||| |||||||||||||| |||| |||||| |||||||||||||||||| |
|
|
| T |
116094 |
tagattttgaaaactaagaattccttcaggatctccactacatatatttttca |
116042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 325
Target Start/End: Complemental strand, 108286 - 108225
Alignment:
| Q |
264 |
tacattttctagattatgaaaactaagaatcccttgaggatccacactacatatatttttca |
325 |
Q |
| |
|
||||||| |||||| |||||||||||||| ||||||||||| |||| ||||| ||||||| |
|
|
| T |
108286 |
tacatttattagattttgaaaactaagaattccttgaggatcttcactccatatctttttca |
108225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0068
Description:
Target: scaffold0068; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 326
Target Start/End: Original strand, 40719 - 40781
Alignment:
| Q |
264 |
tacattttctagattatgaaaactaagaatcccttgaggatccacactacatatatttttcag |
326 |
Q |
| |
|
||||||| |||||| |||||||||||||| ||||||||||| |||| ||||| |||||||| |
|
|
| T |
40719 |
tacatttattagattttgaaaactaagaattccttgaggatctccactccatatctttttcag |
40781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 325
Target Start/End: Complemental strand, 110254 - 110193
Alignment:
| Q |
264 |
tacattttctagattatgaaaactaagaatcccttgaggatccacactacatatatttttca |
325 |
Q |
| |
|
||||||| |||||| |||||||||||||| ||||||||||| |||| ||||| ||||||| |
|
|
| T |
110254 |
tacatttattagattttgaaaactaagaattccttgaggatctccactccatatctttttca |
110193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 325
Target Start/End: Complemental strand, 168503 - 168442
Alignment:
| Q |
264 |
tacattttctagattatgaaaactaagaatcccttgaggatccacactacatatatttttca |
325 |
Q |
| |
|
||||||| |||||| |||||||||||||| ||||||||||| |||| ||||| ||||||| |
|
|
| T |
168503 |
tacatttattagattttgaaaactaagaattccttgaggatcttcactccatatctttttca |
168442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 325
Target Start/End: Complemental strand, 219094 - 219033
Alignment:
| Q |
264 |
tacattttctagattatgaaaactaagaatcccttgaggatccacactacatatatttttca |
325 |
Q |
| |
|
||||||| |||||| |||||||||||||| ||||||||||| |||| ||||| ||||||| |
|
|
| T |
219094 |
tacatttattagattttgaaaactaagaattccttgaggatctgcactccatatctttttca |
219033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 325
Target Start/End: Complemental strand, 145237 - 145185
Alignment:
| Q |
273 |
tagattatgaaaactaagaatcccttgaggatccacactacatatatttttca |
325 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||| |||| ||||| ||||||| |
|
|
| T |
145237 |
tagattttgaaaactaagaattccttgaggatctccactccatatctttttca |
145185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 322
Target Start/End: Complemental strand, 21814762 - 21814714
Alignment:
| Q |
274 |
agattatgaaaactaagaatcccttgaggatccacactacatatatttt |
322 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||| ||||| |||| |
|
|
| T |
21814762 |
agattttgaaaactaagaatcccttgaggatcttcactccatatctttt |
21814714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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