View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21536_low_7 (Length: 373)
Name: NF21536_low_7
Description: NF21536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21536_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 104 - 355
Target Start/End: Complemental strand, 32409319 - 32409066
Alignment:
| Q |
104 |
ttatatttacacttgtagattcaaatgtgtgcacgcagactcataaagacacagatgtaaatcatatcatagtactattgttagactatact--tatatt |
201 |
Q |
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| T |
32409319 |
ttatatttacacttatagattcaaatgtgtgcatgcagactcataaagacacagatgtaaatcatatcatagtactattgttagactataccagtatatt |
32409220 |
T |
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| Q |
202 |
tgtatttggatctattatttcttgtggcttctagtattctcaactttccacaaggacaaatcagcatcaggtacctacctctattcccatgtgtgctcat |
301 |
Q |
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| T |
32409219 |
tgtatttggatctattatttcttgtggcttctagtattctcaactttccacaaggacaaatcagcatcaggtacctacctctattcacatgtgtgctcat |
32409120 |
T |
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| Q |
302 |
aaatcattacaacaaaacaatgtcctacatacatataccctgctcctaccttgt |
355 |
Q |
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| T |
32409119 |
aaatcattacaacaaaacaatgtcctacatacatataccctgctcctaccttgt |
32409066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 32409398 - 32409506
Alignment:
| Q |
1 |
ataggaaaagtgaaaatcgatgagctacattaagtttgcatcaaagcatatgcatatataataccttagaaaagtaacaaactgaaatggacttcaaata |
100 |
Q |
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| T |
32409398 |
ataggaaaagtgaaaatcgatgagctacattaagtttgcatcaaagcacatgcatatataataccttagaaaagtcacaaactgaaatggacttcaaata |
32409497 |
T |
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| Q |
101 |
tgtttatat |
109 |
Q |
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| T |
32409498 |
tgtttatat |
32409506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 272 - 353
Target Start/End: Original strand, 36163198 - 36163279
Alignment:
| Q |
272 |
gtacctacctctattcccatgtgtgctcataaatcattacaacaaaacaatgtcctacatacatataccctgctcctacctt |
353 |
Q |
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| T |
36163198 |
gtacccacctatattcacatgtgtgcccattaatcatcacaacaaaacaatatcctccatacacatatactgctcctacctt |
36163279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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