View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21537_high_10 (Length: 327)
Name: NF21537_high_10
Description: NF21537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21537_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 79; Significance: 6e-37; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 52380236 - 52380322
Alignment:
| Q |
1 |
agtaatagcctattaatttgataaaaagtaccgggtacccattagtgaaaatgacaagcccggcccattaagtagggcagtcttctc |
87 |
Q |
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| T |
52380236 |
agtaatagtctattaatttgataaaaagtaccgggtacccattagtgaaaatgacaagcccggcccattaagtagtgcagtcttctc |
52380322 |
T |
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Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 238 - 313
Target Start/End: Original strand, 52380455 - 52380530
Alignment:
| Q |
238 |
ataacacttcttcacttctgacatgcatcaacataatcattttcattccattttccttcttcacacttcattcttg |
313 |
Q |
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| T |
52380455 |
ataacacttcttcacttctgacatgcatcaacataatcattttcattccattttccttcttcacacttcattcttg |
52380530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 52380399 - 52380435
Alignment:
| Q |
178 |
ggagggaaatcaaaccccccgtagaatcataaaccct |
214 |
Q |
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| T |
52380399 |
ggagggaaatcaaaccccccgtagaatcataaaccct |
52380435 |
T |
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