View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21537_high_14 (Length: 257)
Name: NF21537_high_14
Description: NF21537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21537_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 135 - 249
Target Start/End: Original strand, 8261267 - 8261381
Alignment:
| Q |
135 |
ttattaaatggatccgtttaatacctaactctatcatttatctataactctatattactgcatttcaatatttccattcacaatatcaatatttccaagt |
234 |
Q |
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| T |
8261267 |
ttattaaatggatccgtttaatacctaactctatcatttatctatatctttatattactgcatttcaatatttccattcacaatatcaatatttccaagt |
8261366 |
T |
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| Q |
235 |
aaagctcttcttctc |
249 |
Q |
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||||||||||||||| |
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| T |
8261367 |
aaagctcttcttctc |
8261381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 8261123 - 8261229
Alignment:
| Q |
20 |
agtatggaggagcttgcataaccaactcaatcccacgtgtacatatcactttctcattatctcttcaactcaaaacctataaaattttacaaatattttt |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
8261123 |
agtatggaggagcttgcataaccaactcaatcccacgtgtacatatcactttctcattatctcctcaactcaaaacctataaaattttactaatattttt |
8261222 |
T |
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| Q |
120 |
taggggt |
126 |
Q |
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||||||| |
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| T |
8261223 |
taggggt |
8261229 |
T |
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