View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21537_high_5 (Length: 529)
Name: NF21537_high_5
Description: NF21537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21537_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 463; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 6 - 508
Target Start/End: Original strand, 32619752 - 32620254
Alignment:
| Q |
6 |
agaagcataggggagcagattatggcagtggaaccagacgagcagatggaggcataagggtgcttgcgcaactggtcatgcacagtgcatcagctccttc |
105 |
Q |
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| T |
32619752 |
agaagcagaggggagcagattatggcagtggaaccagacgagcagatggaggcataagggtgcttgcgcaactggtcatgcacagtgcatcagctccttc |
32619851 |
T |
|
| Q |
106 |
acaattcatggcacaacccaagaaattctcaactttcctactgtaacagccagtgacacaagaaataacatcatccccacatttgctaagacattgtacc |
205 |
Q |
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| T |
32619852 |
acaattcatggcacaacccaagaaattctcaactttcctactgtaacagccagtgacacaagaaataacatcatccccacatttgctaagacattgtacc |
32619951 |
T |
|
| Q |
206 |
atattggcttttaggccaacctcttcggcagttgctaatgaaatcagcataagcattccaagaattaggatcatttgcttgctttgtagagtcattgtta |
305 |
Q |
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| T |
32619952 |
agattggcttttaggccaacctcttcggcagttgctaatgaaatcagcataagcattccaagaattaggatcatttgcttgctttgtagagtcattgtta |
32620051 |
T |
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| Q |
306 |
aacttagcttgcttttgttggtttgtttcacaagtttctctaagctagttgtttgtgaatgaaagatattgaagctatcaacgtttatatacttgatatg |
405 |
Q |
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| T |
32620052 |
aactaggcttgcttttgttggtttgtttcacaagtttctctaagctagttgtttgtgaatgaaagatattgaagctatcaacgtttatatacttgatatg |
32620151 |
T |
|
| Q |
406 |
gagaaggtagtggttattttcacgactgaaacaggcatcatacattttgtatgatgtggtagtttggtgtttagattgaggacacttttaacatacttca |
505 |
Q |
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| T |
32620152 |
gagaaggtggtggttattttcatgactaaaacaggtatcatacattttgcatgatgtggtagtttggtgtttagattgaggacgcttttaacatacttca |
32620251 |
T |
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| Q |
506 |
agt |
508 |
Q |
| |
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||| |
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| T |
32620252 |
agt |
32620254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 6 - 450
Target Start/End: Original strand, 32616720 - 32617164
Alignment:
| Q |
6 |
agaagcataggggagcagattatggcagtggaaccagacgagcagatggaggcataagggtgcttgcgcaactggtcatgcacagtgcatcagctccttc |
105 |
Q |
| |
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||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||| ||| ||||| |||||||||||||||||| ||||||||||||| |
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| T |
32616720 |
agaagcagcggggagcagattatgtcagtggaaccggacgagcagatggaggcataatggtacttgcacaactggtcatgcacagtacatcagctccttc |
32616819 |
T |
|
| Q |
106 |
acaattcatggcacaacccaagaaattctcaactttcctactgtaacagccagtgacacaagaaataacatcatccccacatttgctaagacattgtacc |
205 |
Q |
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| T |
32616820 |
acaacttatggcacaacccaagaaattcccaactttccaactgtaacagccagtgacacaagaaagaacatcatccccacatttgccaagacattgtact |
32616919 |
T |
|
| Q |
206 |
atattggcttttaggccaacctcttcggcagttgctaatgaaatcagcataagcattccaagaattaggatcatttgcttgctttgtagagtcattgtta |
305 |
Q |
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| T |
32616920 |
agattggcttttaggccaacctcttcggcagttgctaatgaaatcagcataagcattccaaaaattaggatcatttgcttgctttgtagagtcattgtta |
32617019 |
T |
|
| Q |
306 |
aacttagcttgcttttgttggtttgtttcacaagtttctctaagctagttgtttgtgaatgaaagatattgaagctatcaacgtttatatacttgatatg |
405 |
Q |
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|||| |||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||| ||| || || |||||||||||| |||| |
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| T |
32617020 |
aactaagcttgcttttgttggttagtttcacaagttactctaagctaattgtttgtgaatgaaagatattgatgctctctacatttatatacttgttatg |
32617119 |
T |
|
| Q |
406 |
gagaaggtagtggttattttcacgactgaaacaggcatcatacat |
450 |
Q |
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|||||||| ||||| || ||||||||||||||||| ||||||||| |
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| T |
32617120 |
gagaaggtggtggtcatcttcacgactgaaacaggtatcatacat |
32617164 |
T |
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