View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21537_low_1 (Length: 824)
Name: NF21537_low_1
Description: NF21537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21537_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 475; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 139 - 807
Target Start/End: Original strand, 1304761 - 1305411
Alignment:
| Q |
139 |
atgaaaaagcatgatcaattttgtgattatttatcgtaataacaagcacttctttgaaaaatgattagaaaaatgtaaaaatgctctcgagaaatattaa |
238 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||| |||||||||||| |
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| T |
1304761 |
atgaaaaagcataatcaattttgtgattatttatcgtaataacaagcacttctttagaaaacaattggaaaaatgtaaaaatgctctagagaaatattaa |
1304860 |
T |
|
| Q |
239 |
tgttcacttgccacccaagtttgctttcttcaccgctaggtaagctcaccaaccttctctgaccaccacccttcttccccgatcatcatgaatacaacaa |
338 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
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| T |
1304861 |
tgttcacttgccacccaagtttgctttcttcaccgctaggtaagctcaccaaccttctctaaccaccacccttcttcccc------------------aa |
1304942 |
T |
|
| Q |
339 |
tcattccttggccatgtcttttggatgctacgtttcaaatcgataccaataccaacccagaaaaaattgcaccctccatcatgaaccctaacccagatta |
438 |
Q |
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|
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||| |
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| T |
1304943 |
tcattccatgtccatgtcttttggatgctacgtttcaaatcgataccaataccaacccagaaaaaattgcaccctccaacatgaaccctaatcgagatta |
1305042 |
T |
|
| Q |
439 |
aacattaaaccttcgaaaccctaacccaccaaccattattccatggaaatgccttcagaatggcacaaatggttcatatctaaccaaaacaccacctcaa |
538 |
Q |
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||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1305043 |
aacattaaaccttcgaaacccaatcccaccaaccattattccatggaaatgccttcaaaatggcacaaatggttcatatctaaccaaaacaccacctcaa |
1305142 |
T |
|
| Q |
539 |
aacatacaaaacaaa-ccagaacatttgctcaagccctatcaaatctttgtgatatacccacctctcaacttccccaaccgatatatcttaaaag---at |
634 |
Q |
| |
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||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||| || |
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| T |
1305143 |
aacatacaaaagaaaaccagaacatttgctcaagccctatcaaatttttgtgatatacgcacctctcaacttccccaaccgat----cttaaaaggtgat |
1305238 |
T |
|
| Q |
635 |
aactttgctataacaatcctgatgaggaatatgttgttggtattgaggcatgcaagcataattgcatgctagagtcatttggccaaagggttccacccct |
734 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
1305239 |
aactttgctataacaatcctgatgaggaatatgttgttggtattgcggcatgaaagcataattgcatgctagagtcatttggccaaagggttccaccact |
1305338 |
T |
|
| Q |
735 |
ctcattgtttttgaattacgatcaaaactatcagctatgtgaaagaactttaacaaatggggtattcaatcct |
807 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
1305339 |
ctcattgtttttgaattacgatcaaagctatcagctatgtggaagaactttaacaagtggggtattcaatcct |
1305411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 1304631 - 1304696
Alignment:
| Q |
9 |
gtgagatgaaagaacacgaacatcataaacttattttctctaaatgtaaattaaatatatgactcg |
74 |
Q |
| |
|
|||||||||||| ||| |||||| |||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
1304631 |
gtgagatgaaagcacatgaacatgataaacttattttcactaaatgtaaattaaatatatgactcg |
1304696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 6434254 - 6434194
Alignment:
| Q |
139 |
atgaaaaagcatgatcaattttgtgattatttatcgtaataacaagcacttctttgaaaaa |
199 |
Q |
| |
|
||||||| |||| |||||||||||| || ||| |||||||||||| ||||||||| ||||| |
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|
| T |
6434254 |
atgaaaaggcataatcaattttgtgtttgtttctcgtaataacaatcacttctttaaaaaa |
6434194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 12203064 - 12203121
Alignment:
| Q |
142 |
aaaaagcatgatcaattttgtgattatttatcgtaataacaagcacttctttgaaaaa |
199 |
Q |
| |
|
|||||| || |||||||||||| |||||| || |||||||| ||||||||||||||| |
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| T |
12203064 |
aaaaagtataatcaattttgtgtttatttttcagaataacaatcacttctttgaaaaa |
12203121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 23021474 - 23021414
Alignment:
| Q |
9 |
gtgagatgaaagaacacgaacatcataaacttattttctctaaatgtaaattaaatatatg |
69 |
Q |
| |
|
||||||| |||| | | ||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
23021474 |
gtgagataaaagtatatgaacatcataaacttattttcagaaaatgtaaattaaatatatg |
23021414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 3252242 - 3252299
Alignment:
| Q |
142 |
aaaaagcatgatcaattttgtgattatttatcgtaataacaagcacttctttgaaaaa |
199 |
Q |
| |
|
|||||| || |||||||||||| ||||| ||| ||||||||| ||||| ||||||||| |
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| T |
3252242 |
aaaaagtataatcaattttgtgtttattcatcataataacaatcacttatttgaaaaa |
3252299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 696 - 738
Target Start/End: Original strand, 23108709 - 23108751
Alignment:
| Q |
696 |
ttgcatgctagagtcatttggccaaagggttccacccctctca |
738 |
Q |
| |
|
|||||||| ||||| ||||||||||| |||||||||||||||| |
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|
| T |
23108709 |
ttgcatgcaagagtgatttggccaaaaggttccacccctctca |
23108751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 34609098 - 34609152
Alignment:
| Q |
142 |
aaaaagcatgatcaattttgtgattatttatcgtaataacaagcacttctttgaa |
196 |
Q |
| |
|
|||||| || |||||||||||| ||||||||| |||||||| |||||||||||| |
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| T |
34609098 |
aaaaagtataatcaattttgtgtttatttatcagaataacaatcacttctttgaa |
34609152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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