View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21537_low_12 (Length: 270)

Name: NF21537_low_12
Description: NF21537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21537_low_12
NF21537_low_12
[»] chr4 (2 HSPs)
chr4 (18-168)||(13130342-13130492)
chr4 (84-166)||(12609371-12609452)
[»] chr1 (1 HSPs)
chr1 (42-155)||(18828843-18828955)
[»] chr3 (4 HSPs)
chr3 (30-90)||(13592179-13592239)
chr3 (30-86)||(19165835-19165891)
chr3 (101-155)||(19577836-19577889)
chr3 (122-155)||(8772013-8772046)
[»] chr7 (3 HSPs)
chr7 (82-155)||(19202934-19203006)
chr7 (98-154)||(1586983-1587038)
chr7 (35-77)||(22523457-22523499)
[»] chr8 (4 HSPs)
chr8 (82-167)||(24720857-24720941)
chr8 (82-155)||(26828280-26828352)
chr8 (82-144)||(14998308-14998369)
chr8 (82-155)||(25232132-25232204)
[»] chr5 (3 HSPs)
chr5 (94-155)||(25404972-25405032)
chr5 (83-155)||(19054586-19054657)
chr5 (83-154)||(16783291-16783361)
[»] chr2 (4 HSPs)
chr2 (99-155)||(16816206-16816261)
chr2 (99-155)||(16855363-16855418)
chr2 (30-109)||(25533676-25533755)
chr2 (83-155)||(28923007-28923078)
[»] chr6 (1 HSPs)
chr6 (82-155)||(21842993-21843065)


Alignment Details
Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 18 - 168
Target Start/End: Original strand, 13130342 - 13130492
Alignment:
Q  18 ctaataaacataaaatgaagtgttgcatgggaggcaacccatgggaaccgtcgggctcaagacgcaaaagaagcgttggataggaggtaacctattgatc 117  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||    
T  13130342 ctaataaacgtaaaatgaagtgttgcatgggaggcaatccatgggaaccgtcgggctcaagacgtaaaagaagtgttgggtaggaggtaacctattgatc 13130441  T
Q  118 gtcggggactcagacgttaaacaagcgttgaatgggagacgatccattatc 168  Q
    |||||||||||||||||||||||| || ||||||||||  || ||||||||    
T  13130442 gtcggggactcagacgttaaacaaacgctgaatgggaggtgacccattatc 13130492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 84 - 166
Target Start/End: Complemental strand, 12609452 - 12609371
Alignment:
Q  84 aaagaagcgttggataggaggtaacctattgatcgtcggggactcagacgttaaacaagcgttgaatgggagacgatccatta 166  Q
    ||||||||| | ||||||||  |||||||||| ||||| | ||||||||||||| ||||||||||||||||| ||||||||||    
T  12609452 aaagaagcgcttgataggagacaacctattgaccgtcgag-actcagacgttaaccaagcgttgaatgggaggcgatccatta 12609371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 42 - 155
Target Start/End: Complemental strand, 18828955 - 18828843
Alignment:
Q  42 gcatgggaggcaacccatgggaaccgtcgggctcaagacgcaaaagaagcgttggataggaggtaacctattgatcgtcggggactcagacgttaaacaa 141  Q
    ||||||||||||||| |||||||||||| | || |||||| |||||||||| || |||||||| ||||||||||  ||  |||| |||||||||||||||    
T  18828955 gcatgggaggcaacctatgggaaccgtcagacttaagacgtaaaagaagcgctgaataggaggcaacctattgagagt-tgggaatcagacgttaaacaa 18828857  T
Q  142 gcgttgaatgggag 155  Q
    ||| ||||||||||    
T  18828856 gcgctgaatgggag 18828843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 13592239 - 13592179
Alignment:
Q  30 aaatgaagtgttgcatgggaggcaacccatgggaaccgtcgggctcaagacgcaaaagaag 90  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  13592239 aaatgaagtattgcatgggaggcaacccatgggaaccgttgggctcaagacgtaaaagaag 13592179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 19165835 - 19165891
Alignment:
Q  30 aaatgaagtgttgcatgggaggcaacccatgggaaccgtcgggctcaagacgcaaaa 86  Q
    |||||||| | |||||||||||||||||||||||||  || ||||||||||| ||||    
T  19165835 aaatgaagcgctgcatgggaggcaacccatgggaactatcaggctcaagacgtaaaa 19165891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 155
Target Start/End: Original strand, 19577836 - 19577889
Alignment:
Q  101 gaggtaacctattgatcgtcggggactcagacgttaaacaagcgttgaatgggag 155  Q
    |||| |||||||||| |||| || |||||||||||||||||||| ||||||||||    
T  19577836 gaggcaacctattgaccgtctgg-actcagacgttaaacaagcgctgaatgggag 19577889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 155
Target Start/End: Complemental strand, 8772046 - 8772013
Alignment:
Q  122 gggactcagacgttaaacaagcgttgaatgggag 155  Q
    |||||||||| |||||||||||||||||||||||    
T  8772046 gggactcagatgttaaacaagcgttgaatgggag 8772013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 82 - 155
Target Start/End: Complemental strand, 19203006 - 19202934
Alignment:
Q  82 caaaagaagcgttggataggaggtaacctattgatcgtcggggactcagacgttaaacaagcgttgaatgggag 155  Q
    |||||||||||| | |||||||| |||||||||| ||||||| |||||||||||||||||||| ||||||||||    
T  19203006 caaaagaagcgtcgaataggaggcaacctattgaccgtcggg-actcagacgttaaacaagcgctgaatgggag 19202934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 1587038 - 1586983
Alignment:
Q  98 taggaggtaacctattgatcgtcggggactcagacgttaaacaagcgttgaatggga 154  Q
    ||||||| |||||||||||||||||| ||| |||||||||||||||| |||||||||    
T  1587038 taggaggcaacctattgatcgtcggg-actgagacgttaaacaagcgctgaatggga 1586983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 77
Target Start/End: Original strand, 22523457 - 22523499
Alignment:
Q  35 aagtgttgcatgggaggcaacccatgggaaccgtcgggctcaa 77  Q
    |||||||||||||||||||||||||| || ||||| |||||||    
T  22523457 aagtgttgcatgggaggcaacccatgagatccgtcaggctcaa 22523499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 167
Target Start/End: Original strand, 24720857 - 24720941
Alignment:
Q  82 caaaagaagcgttggataggaggtaacctattgatcgtcggggactcagacgttaaacaagcgttgaatgggagacgatccattat 167  Q
    |||||||||||||| |||||||| ||| |||||| |||| ||||||||||||||||||||||| | ||| |||||| | |||||||    
T  24720857 caaaagaagcgttgaataggaggcaacttattgaccgtc-gggactcagacgttaaacaagcgcttaataggagacaacccattat 24720941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 155
Target Start/End: Original strand, 26828280 - 26828352
Alignment:
Q  82 caaaagaagcgttggataggaggtaacctattgatcgtcggggactcagacgttaaacaagcgttgaatgggag 155  Q
    |||||||||||||  |||||||| |||||||||| |||| || ||||| |||||||||||||||||||||||||    
T  26828280 caaaagaagcgttaaataggaggcaacctattgaccgtcagg-actcatacgttaaacaagcgttgaatgggag 26828352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 144
Target Start/End: Complemental strand, 14998369 - 14998308
Alignment:
Q  82 caaaagaagcgttggataggaggtaacctattgatcgtcggggactcagacgttaaacaagcg 144  Q
    ||||||||| |||| |||||||  |||||||||| ||||||| | ||||||||||||||||||    
T  14998369 caaaagaagtgttgaataggagacaacctattgaccgtcgggaa-tcagacgttaaacaagcg 14998308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 155
Target Start/End: Complemental strand, 25232204 - 25232132
Alignment:
Q  82 caaaagaagcgttggataggaggtaacctattgatcgtcggggactcagacgttaaacaagcgttgaatgggag 155  Q
    |||| ||||||||| |||||| | |||||||||| |||| || ||||| | |||||||||| ||||||||||||    
T  25232204 caaatgaagcgttgaataggatgcaacctattgaccgtcagg-actcaaatgttaaacaagtgttgaatgggag 25232132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 155
Target Start/End: Original strand, 25404972 - 25405032
Alignment:
Q  94 tggataggaggtaacctattgatcgtcggggactcagacgttaaacaagcgttgaatgggag 155  Q
    ||||||||||| |||||||||| | ||||| | |||||||||||||||| ||||||||||||    
T  25404972 tggataggaggaaacctattgaccatcggg-attcagacgttaaacaagtgttgaatgggag 25405032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 155
Target Start/End: Complemental strand, 19054657 - 19054586
Alignment:
Q  83 aaaagaagcgttggataggaggtaacctattgatcgtcggggactcagacgttaaacaagcgttgaatgggag 155  Q
    |||||||||| ||||||||||  || ||||||| || | |||||||||||||||||||| || ||||||||||    
T  19054657 aaaagaagcgctggataggagacaatctattgaccg-ctgggactcagacgttaaacaaacgctgaatgggag 19054586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 154
Target Start/End: Original strand, 16783291 - 16783361
Alignment:
Q  83 aaaagaagcgttggataggaggtaacctattgatcgtcggggactcagacgttaaacaagcgttgaatggga 154  Q
    |||||||||| || |||||||| |||||||| | ||||||| ||||||||||| |||||||| |||| ||||    
T  16783291 aaaagaagcgctgaataggaggcaacctattaaccgtcggg-actcagacgttgaacaagcgctgaagggga 16783361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 155
Target Start/End: Complemental strand, 16816261 - 16816206
Alignment:
Q  99 aggaggtaacctattgatcgtcggggactcagacgttaaacaagcgttgaatgggag 155  Q
    |||||| |||||||||||| ||||| ||| |||||||||||||||| ||||||||||    
T  16816261 aggaggaaacctattgatcatcggg-actaagacgttaaacaagcgctgaatgggag 16816206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 155
Target Start/End: Complemental strand, 16855418 - 16855363
Alignment:
Q  99 aggaggtaacctattgatcgtcggggactcagacgttaaacaagcgttgaatgggag 155  Q
    |||||| |||||||||||| ||||| ||| |||||||||||||||| ||||||||||    
T  16855418 aggaggaaacctattgatcatcggg-actaagacgttaaacaagcgctgaatgggag 16855363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 109
Target Start/End: Complemental strand, 25533755 - 25533676
Alignment:
Q  30 aaatgaagtgttgcatgggaggcaacccatgggaaccgtcgggctcaagacgcaaaagaagcgttggataggaggtaacc 109  Q
    |||||||| | |||||||||||||||| |||||| | ||| | ||||||||| |||||||||| || || ||||| ||||    
T  25533755 aaatgaagcgctgcatgggaggcaacctatgggacctgtcagactcaagacgtaaaagaagcgctgaatgggaggcaacc 25533676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 155
Target Start/End: Complemental strand, 28923078 - 28923007
Alignment:
Q  83 aaaagaagcgttggataggaggtaacctattgatcgtcggggactcagacgttaaacaagcgttgaatgggag 155  Q
    |||||||| | || ||||||||  ||||||| ||||||||| ||||||||||||||||| |  ||||||||||    
T  28923078 aaaagaagtgatgaataggaggccacctattaatcgtcggg-actcagacgttaaacaaacactgaatgggag 28923007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 155
Target Start/End: Original strand, 21842993 - 21843065
Alignment:
Q  82 caaaagaagcgttggataggaggtaacctattgatcgtcggggactcagacgttaaacaagcgttgaatgggag 155  Q
    ||||||||||  || |||||||| |||||||||| ||||  | |||||||||||||||||||| |||| |||||    
T  21842993 caaaagaagcactgaataggaggcaacctattgaccgtctag-actcagacgttaaacaagcgctgaaagggag 21843065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University