View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21537_low_2 (Length: 719)
Name: NF21537_low_2
Description: NF21537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21537_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 42 - 370
Target Start/End: Original strand, 8134461 - 8134789
Alignment:
| Q |
42 |
ccgcatctttgtcttgtggttgtaaccgtccaagttcatgtagcaacctgcgatggtgcaaatcatgttaagtcacacacctgtagcttgtttgttgacc |
141 |
Q |
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| T |
8134461 |
ccgcatctttgtctcgtggttgtaaccgtccaagttcatgtagcaacctgcgatggtgcaaatcatgttaagtcacacacctgtagcttgtttgttgacc |
8134560 |
T |
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| Q |
142 |
atatttagtaccgagatttctgattgaatatatgtctggtgtccgagacatgctagtgttggatactaacacaacatctatgcatgtagtttcattcaat |
241 |
Q |
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| T |
8134561 |
atatttattaccgagatttctgattgaatatatgtctggtgtccgagacatgctagtgttggatactaacacaacatccacgcatgtagtttcattcaat |
8134660 |
T |
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| Q |
242 |
aacnnnnnnnctcaaattattatctgcgtatatgcgatgtgtcaatgttctttctcatgtacgtgtcggcatgtcctatgtagctttaaaactttagatt |
341 |
Q |
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| T |
8134661 |
aactttttttctcaaattattatcgatgtatatgcgatgtgtcaatattctttctcatgtacgtgtcggcatgtcctatgtagctttgaaactttagatt |
8134760 |
T |
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| Q |
342 |
gaagacatgtttggtgtgcgacatgacac |
370 |
Q |
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| T |
8134761 |
gatgacatgtttggtgtgcgacatgacac |
8134789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 433 - 704
Target Start/End: Original strand, 8134852 - 8135128
Alignment:
| Q |
433 |
gtgtcgatacgtcagtgttgtatacaatgtttgtttatgtcaatatcatgtgtggtgtttgatatcattgatcgattagaaatagtgtttgattatatgt |
532 |
Q |
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| T |
8134852 |
gtgtcgatacgtcagtgttgtatacaatgtttgtttatgtcaatatcatgtgtggtgtttgatatcattgattgattagaaatagtgtttgattatatgt |
8134951 |
T |
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| Q |
533 |
tgcactgaaatttaagattgaaaatgtgtttggtgtccgaggcatgctaatgttggacactaacacatcacccacacatgtacattcaatcgc-----nn |
627 |
Q |
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| T |
8134952 |
tgcactgaaatttcagattgaaaatgtgtttggcgtccaaggcatgctaatgttggacactaacacatcacccacacatgtacattcaatcgcttttttt |
8135051 |
T |
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| Q |
628 |
nnnnnncttaaattattagaagtgtatatacgtatttatcaatgttgtgtctgatatatgtgtcgacgtgtcctatg |
704 |
Q |
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| T |
8135052 |
ttttctcttaaattattagaagtgtatatgcgtatgtatcaatgttgtgtctgatatacgtgtcgacgtgtcctatg |
8135128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 269 - 380
Target Start/End: Original strand, 8135075 - 8135187
Alignment:
| Q |
269 |
gtatatgcg-atgtgtcaatgttctttctcatgtacgtgtcggcatgtcctatgtagctttaaaactttagattgaagacatgtttggtgtgcgacatga |
367 |
Q |
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| T |
8135075 |
gtatatgcgtatgtatcaatgttgtgtctgatatacgtgtcgacgtgtcctatgtagctccgaaactttagattgaagacgtgtctagcatccgatatga |
8135174 |
T |
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| Q |
368 |
caccaaaacatgt |
380 |
Q |
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| T |
8135175 |
caccaaaacatgt |
8135187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 548 - 614
Target Start/End: Original strand, 8134582 - 8134648
Alignment:
| Q |
548 |
gattgaaaatgtgtttggtgtccgaggcatgctaatgttggacactaacacatcacccacacatgta |
614 |
Q |
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| T |
8134582 |
gattgaatatatgtctggtgtccgagacatgctagtgttggatactaacacaacatccacgcatgta |
8134648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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