View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21537_low_3 (Length: 612)

Name: NF21537_low_3
Description: NF21537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21537_low_3
NF21537_low_3
[»] chr4 (2 HSPs)
chr4 (276-607)||(54180011-54180342)
chr4 (1-246)||(54180372-54180617)
[»] chr3 (3 HSPs)
chr3 (276-579)||(1211060-1211366)
chr3 (1-239)||(1210779-1211023)
chr3 (474-541)||(38102604-38102671)
[»] chr5 (8 HSPs)
chr5 (276-601)||(41948307-41948635)
chr5 (276-579)||(41942793-41943099)
chr5 (410-585)||(22794935-22795110)
chr5 (1-171)||(22794529-22794699)
chr5 (5-239)||(41948030-41948270)
chr5 (276-376)||(22794822-22794922)
chr5 (1-217)||(41942512-41942734)
chr5 (174-218)||(22794720-22794764)
[»] chr7 (1 HSPs)
chr7 (450-523)||(39485527-39485600)


Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 276 - 607
Target Start/End: Complemental strand, 54180342 - 54180011
Alignment:
Q  276 tatttgttttcatttgttggtgctccaaggcctaatgtaacatcttctattaggaatgagttaatcgaacattgcgaatcttccaagggttgcaaacttg 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54180342 tatttgttttcatttgttggtgctccaaggcctaatgtaacatcttctattaggaatgagttaatcgaacattgcgaatcttccaagggttgcaaacttg 54180243  T
Q  376 ttggatgctattatggttataccaaagatcgttgtggcgatcctgttcatgttatggatgcttttaggaattcagttttttgtttacaaccgccggggga 475  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  54180242 ttggatgctattatggttataacaaagatcgttgtggcgatcctgttcatgttatggatgtttttaggaattcagttttttgtttacaaccgccggggga 54180143  T
Q  476 ttcttacacaaggagatcaacttttgattcgattttggcgggttgtattcctgttttctttcatccaaaatcaacatacaagcaatatgtgtggcatttt 575  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54180142 ttcttacacaaggagatcaacttttgattcgattttggcgggttgtattcctgttttctttcatccaaaatcaacatacaagcaatatgtgtggcatttt 54180043  T
Q  576 cctacaaatagttccaactactctgtgctcct 607  Q
    ||||||||||||||||||||||||||| ||||    
T  54180042 cctacaaatagttccaactactctgtgttcct 54180011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 54180617 - 54180372
Alignment:
Q  1 tagcacaacaacctcaatggaaaagagtatatggtaaggatcatttcatggttggtggaagaataagttatgattttagaagaagaagtgatgaaaatga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54180617 tagcacaacaacctcaatggaaaagagtatatggtaaggatcatttcatggttggtggaagaataagttatgattttagaagaagaagtgatgaaaatga 54180518  T
Q  101 agattggggaacaaagttgatgtttttaccggaagcaagtaacatgtcgatgttatcaatagaatcatgtggttatgataatgaattttcaattccatat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54180517 agattggggaacaaagttgatgtttttaccggaagcaagtaacatgtcgatgttatcaatagaatcatgtggttatgataatgaattttcaattccatat 54180418  T
Q  201 ccaacttattttcatcctaataatgatgctcaaatttttgggtggc 246  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  54180417 ccaacttattttcatcctactaatgatgctcaaatttttgggtggc 54180372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 145; Significance: 5e-76; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 276 - 579
Target Start/End: Original strand, 1211060 - 1211366
Alignment:
Q  276 tatttgttttcatttgttggtgctccaaggcctaatgtaacatcttctattaggaatgagttaatcgaacattgcgaatcttccaagggttgcaaacttg 375  Q
    ||||||||| ||||||| ||||||||||||||| ||  | ||||||||||||| ||| ||||||||||||||||||||||||| ||| |||| |||| ||    
T  1211060 tatttgtttacatttgtcggtgctccaaggcctgattcaccatcttctattagaaatcagttaatcgaacattgcgaatcttctaagagttgtaaacgtg 1211159  T
Q  376 ttggatgctattatggttataccaa---agatcgttgtggcgatcctgttcatgttatggatgcttttaggaattcagttttttgtttacaaccgccggg 472  Q
    ||||||| ||| |||||| ||  ||   | |  ||||| ||||||||||||| |||||||||  ||||  |||||| |||||||||||||||||||||||    
T  1211160 ttggatgttatcatggttctagtaagaaaaaaagttgtcgcgatcctgttcaagttatggataattttcagaattcggttttttgtttacaaccgccggg 1211259  T
Q  473 ggattcttacacaaggagatcaacttttgattcgattttggcgggttgtattcctgttttctttcatccaaaatcaacatacaagcaatatgtgtggcat 572  Q
    ||||||||  || || ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||  |||| |||||||||||||| ||||||||    
T  1211260 ggattcttttactagaagatcaatttttgattcgattttggcgggttgtattcctgttttcttgcatccactatcagcatacaagcaatatttgtggcat 1211359  T
Q  573 tttccta 579  Q
    |||||||    
T  1211360 tttccta 1211366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 1210779 - 1211023
Alignment:
Q  1 tagcacaacaacctcaatggaaaagagtatatggtaaggatcatttcatggttggtggaagaataagttatgattttagaagaagaagtgatgaaaatga 100  Q
    ||||||||||| |||| ||||||||| |  ||||||| ||||||||||||||||||||||||||  ||| ||||||| | |||  | |||||  | || |    
T  1210779 tagcacaacaatctcagtggaaaagattgcatggtaaagatcatttcatggttggtggaagaattggttgtgatttttggagagaaggtgatttagatca 1210878  T
Q  101 agattggggaacaaagttgatgtttttaccggaagcaagtaacatgtcgatgttatcaatagaatcatgt---ggt---tatgataatgaattttcaatt 194  Q
      |||||||||||||| | ||||| || || |||| ||||||||||||  | || | |||||||||||||    ||   ||||| ||||||||| |||||    
T  1210879 taattggggaacaaagctaatgttcttgccagaagtaagtaacatgtcatttttgttaatagaatcatgtaaatgtttatatgacaatgaatttccaatt 1210978  T
Q  195 ccatatccaacttattttcatcctaataatgatgctcaaattttt 239  Q
    ||||||||||||||||||||| |||  ||||||| | ||||||||    
T  1210979 ccatatccaacttattttcatgctacaaatgatgatgaaattttt 1211023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 474 - 541
Target Start/End: Original strand, 38102604 - 38102671
Alignment:
Q  474 gattcttacacaaggagatcaacttttgattcgattttggcgggttgtattcctgttttctttcatcc 541  Q
    ||||| |||||||| ||||||| ||||||||| ||||| || |||||||||||||| || ||||||||    
T  38102604 gattcatacacaagaagatcaatttttgattcaattttagctggttgtattcctgtgttttttcatcc 38102671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 3e-62; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 276 - 601
Target Start/End: Original strand, 41948307 - 41948635
Alignment:
Q  276 tatttgttttcatttgttggtgctccaaggcctaatgtaacatcttctattaggaatgagttaatcgaacattgcgaatcttccaagggttgcaaacttg 375  Q
    ||||||||| ||||||| ||||||||||||||| ||  | |||||||| |||| ||| |||||||| |||||||||||||||| ||| |||| |||| ||    
T  41948307 tatttgtttacatttgtcggtgctccaaggcctgattcaccatcttctgttagaaatcagttaatcaaacattgcgaatcttctaagagttgtaaacgtg 41948406  T
Q  376 ttggatgctattatggttataccaa--agatc-gttgtggcgatcctgttcatgttatggatgcttttaggaattcagttttttgtttacaaccgccggg 472  Q
    ||||||| ||| |||||| ||  ||  | ||  ||||| ||||||||||||| |||||||||  ||||  |||||| || |||||||||||||||  |||    
T  41948407 ttggatgttatcatggttctagtaagaaaataagttgtcgcgatcctgttcaagttatggataattttcagaattcggtattttgtttacaaccgatggg 41948506  T
Q  473 ggattcttacacaaggagatcaacttttgattcgattttggcgggttgtattcctgttttctttcatccaaaatcaacatacaagcaatatgtgtggcat 572  Q
    ||||||||  || ||  |||||| ||||||||| ||||||||||||||||||||||||||||||||||||  |||| |||||||||||||| ||||||||    
T  41948507 ggattcttttactagatgatcaatttttgattcaattttggcgggttgtattcctgttttctttcatccactatcagcatacaagcaatatttgtggcat 41948606  T
Q  573 tttcctacaaatagttccaactactctgt 601  Q
    ||||||| |||  |||| || ||||||||    
T  41948607 tttcctaaaaacggttctaattactctgt 41948635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 276 - 579
Target Start/End: Original strand, 41942793 - 41943099
Alignment:
Q  276 tatttgttttcatttgttggtgctccaaggcctaatgtaacatcttctattaggaatgagttaatcgaacattgcgaatcttccaagggttgcaaacttg 375  Q
    ||||||||||||||||| ||||||||||| ||||||  ||||||||||||||| |||||||||||| ||||||| |||||||| ||| |||||||| |||    
T  41942793 tatttgttttcatttgtcggtgctccaagacctaattcaacatcttctattagaaatgagttaatcaaacattgtgaatcttctaagagttgcaaatttg 41942892  T
Q  376 ttggatgctattatggttataccaa---agatcgttgtggcgatcctgttcatgttatggatgcttttaggaattcagttttttgtttacaaccgccggg 472  Q
    || |||| ||| |||||| ||  ||   | |  ||||  ||||||||||||| |||||||||  ||||  |||||| ||||||||||||||||||   ||    
T  41942893 ttcgatgttatcatggttctagtaagaaaaaaagttgccgcgatcctgttcaagttatggataattttcagaattcggttttttgtttacaaccggttgg 41942992  T
Q  473 ggattcttacacaaggagatcaacttttgattcgattttggcgggttgtattcctgttttctttcatccaaaatcaacatacaagcaatatgtgtggcat 572  Q
    ||||||||  || || |||||||  ||||||||||||||||| |||||||||||||||||||| ||||||   ||| |||||||||||||| ||||||||    
T  41942993 ggattcttttactagaagatcaatatttgattcgattttggcaggttgtattcctgttttcttgcatccactgtcagcatacaagcaatatttgtggcat 41943092  T
Q  573 tttccta 579  Q
    |||||||    
T  41943093 tttccta 41943099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 410 - 585
Target Start/End: Original strand, 22794935 - 22795110
Alignment:
Q  410 tggcgatcctgttcatgttatggatgcttttaggaattcagttttttgtttacaaccgccgggggattcttacacaaggagatcaacttttgattcgatt 509  Q
    ||||||||| ||||||||| |||||| ||||  ||| |||||||||||||||||||| || || |||||||  || || |||||||||||||||||||||    
T  22794935 tggcgatcccgttcatgttctggatgtttttcagaaatcagttttttgtttacaacctcctggtgattcttttaccagaagatcaacttttgattcgatt 22795034  T
Q  510 ttggcgggttgtattcctgttttctttcatccaaaatcaacatacaagcaatatgtgtggcattttcctacaaata 585  Q
    ||||| || |||||||||||||||||||||||| | ||| | || ||||||||| ||||||||||||||| |||||    
T  22795035 ttggccggctgtattcctgttttctttcatccacattcagcgtataagcaatatatgtggcattttcctaaaaata 22795110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 22794529 - 22794699
Alignment:
Q  1 tagcacaacaacctcaatggaaaagagtatatggtaaggatcatttcatggttggtggaagaataagttatgattttagaagaagaagtgatgaaaatga 100  Q
    ||||||||||| ||||||||||| || | ||||||||||||||||||||||||||||||||| |  | ||||||||||| ||| |||| ||| || ||||    
T  22794529 tagcacaacaatctcaatggaaacgaatgtatggtaaggatcatttcatggttggtggaagagttggatatgattttaggagaggaagcgataaagatga 22794628  T
Q  101 agattggggaacaaagttgatgtttttaccggaagcaagtaacatgtcgatgttatcaatagaatcatgtg 171  Q
    |||||||||||||||| | |||||| | |||||||| ||||||||  |||| |||  ||||||||| ||||    
T  22794629 agattggggaacaaagctaatgtttctgccggaagctagtaacattacgattttactaatagaatcgtgtg 22794699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 5 - 239
Target Start/End: Original strand, 41948030 - 41948270
Alignment:
Q  5 acaacaacctcaatggaaaagagtatatggtaaggatcatttcatggttggtggaagaataagttatgattttagaagaagaagtgatgaaaatgaagat 104  Q
    ||||||| |||| ||||||||| |  ||||||| ||||||||||||||||||||||||||  ||| ||||||||| |||  | |||||  | || |  ||    
T  41948030 acaacaatctcagtggaaaagattgcatggtaaagatcatttcatggttggtggaagaattggttgtgattttaggagagaaggtgattcagatcataat 41948129  T
Q  105 tggggaacaaagttgatgtttttaccggaagcaagtaacatgtcgatgttatcaatagaatcatgt---ggtt---atgataatgaattttcaattccat 198  Q
    |||||||||||| | ||||| || || |||| ||||||||||||  | || | |||||||||||||   ||||   |||| ||||||||| |||||||||    
T  41948130 tggggaacaaagctaatgttcttgccagaagtaagtaacatgtcatttttgttaatagaatcatgtaaaggtttatatgacaatgaatttccaattccat 41948229  T
Q  199 atccaacttattttcatcctaataatgatgctcaaattttt 239  Q
    |||||||||||||||||||||  ||||||| | ||||||||    
T  41948230 atccaacttattttcatcctacaaatgatgatgaaattttt 41948270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 276 - 376
Target Start/End: Original strand, 22794822 - 22794922
Alignment:
Q  276 tatttgttttcatttgttggtgctccaaggcctaatgtaacatcttctattaggaatgagttaatcgaacattgcgaatcttccaagggttgcaaacttg 375  Q
    ||||||||||||||||| |||||||||||||| ||| |||||||||| ||||| || ||||||||||| |||||  ||||||| ||| ||||||||||||    
T  22794822 tatttgttttcatttgtcggtgctccaaggccaaatttaacatcttcaattagaaacgagttaatcgatcattgtcaatcttctaagagttgcaaacttg 22794921  T
Q  376 t 376  Q
    |    
T  22794922 t 22794922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 41942512 - 41942734
Alignment:
Q  1 tagcacaacaacctcaatggaaaagagtatatggtaaggatcatttcatggttggtggaagaataagttatgattttagaagaagaagtgatgaaaatga 100  Q
    ||||||||||| |||| ||||||||| |  ||||||| ||||||||||||||||||||||||||  ||| ||||||||| |||  | | |||    ||||    
T  41942512 tagcacaacaatctcagtggaaaagattgcatggtaaagatcatttcatggttggtggaagaattggttgtgattttaggagagaaggagatttggatga 41942611  T
Q  101 agattggggaacaaagttgatgtttttaccggaagcaagtaacatgtcgatgttatcaatagaatcatgt---ggtt---atgataatgaattttcaatt 194  Q
     ||||  ||||||||| | ||||  || || |||  ||||||| ||||  | || | ||||||||| |||   ||||   |||| ||||||||| |||||    
T  41942612 tgattttggaacaaagctaatgtccttgccagaattaagtaacgtgtcatttttgttaatagaatcgtgtaaaggtttatatgacaatgaatttccaatt 41942711  T
Q  195 ccatatccaacttattttcatcc 217  Q
    |||||||||||||||||||||||    
T  41942712 ccatatccaacttattttcatcc 41942734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 22794720 - 22794764
Alignment:
Q  174 tatgataatgaattttcaattccatatccaacttattttcatcct 218  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||    
T  22794720 tatgagaatgaatttgcaattccatatccaacttattttcatcct 22794764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 523
Target Start/End: Complemental strand, 39485600 - 39485527
Alignment:
Q  450 gttttttgtttacaaccgccgggggattcttacacaaggagatcaacttttgattcgattttggcgggttgtat 523  Q
    ||||||||| | ||||| | ||| |||||||| ||||| |||||  ||||||||||||| ||||| ||||||||    
T  39485600 gttttttgtcttcaacctcagggtgattcttatacaagaagatctgcttttgattcgatgttggctggttgtat 39485527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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