View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21537_low_6 (Length: 438)
Name: NF21537_low_6
Description: NF21537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21537_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 124 - 421
Target Start/End: Complemental strand, 362752 - 362456
Alignment:
| Q |
124 |
atttagcataatcatccaacaggtacgacatatatatttataaaccaaatatcacataatagtacctgctcccacgtggtatattaattagaggtttatt |
223 |
Q |
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| T |
362752 |
atttagcataatcatccaacaggtacgacatatatatttataaaccaaatatcacataatagtacctgctcccacgtggtatattaattagaggtttatt |
362653 |
T |
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| Q |
224 |
tgcaagtactacttgagaagtnnnnnnnnnnnnnnnntatatcacataatagtgaacatttaaaatttgtgtcaacctgcatgcataaaagttttattgc |
323 |
Q |
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| T |
362652 |
tgcaagtactacttgagaagtaaaaaaaataaaaaa-tatatcacataatagtgaacatttaaaatttgtgtcaacctgcatgcataaaagttttattgc |
362554 |
T |
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| Q |
324 |
aaagtactacttccaagttacatacaagaagcttccacagtacagtatactcccacatgtttcagtggtttgacttaaaaccctaaatttgcaaatat |
421 |
Q |
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| T |
362553 |
aaagtactacttccaagttacatacaagaagcttccacagtacagtatactcccacatgtttcagtggtttgacttaaaaccctaaatttgcaaatat |
362456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 362781 - 362869
Alignment:
| Q |
18 |
tattacatagtttttgattttatacaagtgttgttgtagtatagagcataagacttgcttgggaaaggacttgtccttcattaaaattaaaa |
109 |
Q |
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| T |
362781 |
tattacatagtttttgattttctacaagtgtt---gtagtatagagcataggacttgcatgggaaaggacttgtacttcattaaaattaaaa |
362869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 69 - 127
Target Start/End: Original strand, 377682 - 377740
Alignment:
| Q |
69 |
gacttgcttgggaaaggacttgtccttcattaaaattaaaatgatagcaattgcaattt |
127 |
Q |
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| T |
377682 |
gacttgtttgggaaaggacttgtccttcattcaagttaaaatgatagcaattgctattt |
377740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 127
Target Start/End: Complemental strand, 346819 - 346762
Alignment:
| Q |
70 |
acttgcttgggaaaggacttgtccttcattaaaattaaaatgatagcaattgcaattt |
127 |
Q |
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| T |
346819 |
acttgtttgggaaaggacttgtccttcattcaaattaagatgacaacaattgctattt |
346762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 127
Target Start/End: Complemental strand, 355478 - 355421
Alignment:
| Q |
70 |
acttgcttgggaaaggacttgtccttcattaaaattaaaatgatagcaattgcaattt |
127 |
Q |
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| T |
355478 |
acttgtttgggaaaggacttgtccttcattcaaattaagatgacaacaattgctattt |
355421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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