View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21538_high_14 (Length: 380)
Name: NF21538_high_14
Description: NF21538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21538_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 31876274 - 31875902
Alignment:
| Q |
1 |
ttgggtataataattaatcatgtttgataaaattacattctaataattaactagtactatatgctgatctttgttggttaattttgcaggataagtataa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31876274 |
ttgggtataataattaatcatgtttgataaaattacattctaataattaactagtactatatgctgatctttgttggttaattttgcaggataagtataa |
31876175 |
T |
|
| Q |
101 |
actttataaactccacaataactttgtgcaatgtggggaccccttgtgtgttgcattccagaaaaaa-gataaacttccttgtgttgatgcaggtatgaa |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
31876174 |
actttataaactccacaataactttgtgcaatgtggggaccccttgtgtgttgcattccagaaaaaaagataaacttccttgtgttgatgcaggtatgaa |
31876075 |
T |
|
| Q |
200 |
taaaccctgcaagaagttatgtgcggataaaactggctatatatgtagacggtcttcaaactaagggtttcctagtacaagacaacattcccttagaaag |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31876074 |
taaaccctgcaagaagttatgtgcggataaaactggctatatatgtagacggtcttcaaactaagggtttcctagtacaagacaacattcccttagaaag |
31875975 |
T |
|
| Q |
300 |
ctctgatcgcactttacagcgtcctaagctggcattcgggtgagtcacctaagattaattggttagatctgtgtt |
374 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
31875974 |
ctctgatcgcactttacagcgtcctaagctggcattcgg--gagtcacctaagattaattggttagatttgtgtt |
31875902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 8 - 173
Target Start/End: Original strand, 886191 - 886363
Alignment:
| Q |
8 |
taataattaatcatgtttgataaaattacattctaataattaacta----gtactatatgctgatctttgttggttaattttgcaggataagtataaact |
103 |
Q |
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|||||||||||||||||||| | | |||||||||||||||||| || |||||||||||| ||||||||| ||||||||||||| |||| ||||||| |
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| T |
886191 |
taataattaatcatgtttgacatatttacattctaataattaattaattagtactatatgcttatctttgtttgttaattttgcagcctaaggataaact |
886290 |
T |
|
| Q |
104 |
ttataaactccacaataac---tttgtgcaatgtggggaccccttgtgtgttgcattccagaaaaaagataaa |
173 |
Q |
| |
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|||||||| |||| ||| |||||| ||| |||| |||||||||| |||| ||||||||||| ||||| |
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| T |
886291 |
ttataaacctgacaaaaacaaatttgtgaaatatgggacgcccttgtgtgatgcagtccagaaaaaaaataaa |
886363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 31660246 - 31660348
Alignment:
| Q |
8 |
taataattaatcatgtttgataaaattacatt---ctaataattaactagtactatatgctgatctttgttggttaattttgcaggataagtataaactt |
104 |
Q |
| |
|
|||||||||||||||||||| | ||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||| || | |||||||| |
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| T |
31660246 |
taataattaatcatgtttgacataattacattaatctaataattaattagtactatatgttgatctttgttggttaattttgcagcctagggataaactt |
31660345 |
T |
|
| Q |
105 |
tat |
107 |
Q |
| |
|
||| |
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|
| T |
31660346 |
tat |
31660348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 107
Target Start/End: Complemental strand, 31936140 - 31936038
Alignment:
| Q |
8 |
taataattaatcatgtttgataaaattacatt---ctaataattaactagtactatatgctgatctttgttggttaattttgcaggataagtataaactt |
104 |
Q |
| |
|
|||| ||||||||||||||| | ||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||| || | |||||||| |
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| T |
31936140 |
taatcattaatcatgtttgacataattacattaatctaataattaattagtactatatgttgatctttgttggttaattttgcagcctagggataaactt |
31936041 |
T |
|
| Q |
105 |
tat |
107 |
Q |
| |
|
||| |
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|
| T |
31936040 |
tat |
31936038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 31974464 - 31974363
Alignment:
| Q |
9 |
aataattaatcatgtttgataaaattacatt---ctaataattaactagtactatatgctgatctttgttggttaattttgcaggataagtataaacttt |
105 |
Q |
| |
|
||||||||||||||||||| | ||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||| || | ||||||||| |
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|
| T |
31974464 |
aataattaatcatgtttgacataattacattaatctaataattaattagtactatatattgatctttgttggttaattttgcagcctagggataaacttt |
31974365 |
T |
|
| Q |
106 |
at |
107 |
Q |
| |
|
|| |
|
|
| T |
31974364 |
at |
31974363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 347
Target Start/End: Complemental strand, 31974298 - 31974199
Alignment:
| Q |
252 |
tcttcaaactaagggtttcctagtacaagaca-ac---attcccttagaaagctctgatcgcactttacagcgtcctaagctggcattcgggtgagtcac |
347 |
Q |
| |
|
|||| ||||||| |||||||||||| |||||| || |||||| | |||||||||||||||||||||||||| ||| || | |||||||||||| |||| |
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|
| T |
31974298 |
tcttgaaactaaaggtttcctagtaaaagacagacagtattcccattgaaagctctgatcgcactttacagcgccctgaggtcgcattcgggtgattcac |
31974199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 31935942 - 31935906
Alignment:
| Q |
279 |
agacaacattcccttagaaagctctgatcgcacttta |
315 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||| |
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|
| T |
31935942 |
agacaatattcccatagaaagctctgatcgcacttta |
31935906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 31899699 - 31899807
Alignment:
| Q |
8 |
taataattaatcatgtttgataaaattacat--tctaataattaactagtactatatgct---gatctttgttggttaattttgcaggataagtataaac |
102 |
Q |
| |
|
|||||||||||||||||||| | |||||||| |||||||||||| |||||||||||||| |||||||||| ||||||||||||| |||| |||||| |
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| T |
31899699 |
taataattaatcatgtttgacataattacatattctaataattaattagtactatatgctgctgatctttgtttgttaattttgcagcctaaggataaac |
31899798 |
T |
|
| Q |
103 |
tttataaac |
111 |
Q |
| |
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||||||||| |
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|
| T |
31899799 |
tttataaac |
31899807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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