View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21538_high_16 (Length: 319)
Name: NF21538_high_16
Description: NF21538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21538_high_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 20 - 301
Target Start/End: Complemental strand, 35080054 - 35079772
Alignment:
| Q |
20 |
gaacaaagagtattaatggctggtggatttgcttgactcgatttacgcaaaaaactgtctttactctttagtattcttttgttaaaaagaacggttttaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35080054 |
gaacaaagagtattaatggctggtggatttgcttgactcgatttacgcaaaaaactgtctttactctttagtattcttttgttaaaaagaacggttttaa |
35079955 |
T |
|
| Q |
120 |
aaccgtcatttttgagat-acatgtaaaatttgcctataaattaagaaccataaagtaagttctatagttcattataattaacaaaagtgaaatggcacc |
218 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
35079954 |
aaccgtcatttttgagatgacatgtaaaatttgcctataaattaagaaccataaagtaagttctatagttcattataattaacaaaagagaaatggcacc |
35079855 |
T |
|
| Q |
219 |
ttcagcttgtttatccgttttgctcgctatttcaatgatctttatttcccatgccatttcactaccaacaccaagccccaagt |
301 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35079854 |
ttcagcttgtttatccgttttgctcgttatttcaatgatctttatttcccatgccatttcactaccaacaccaagccccaagt |
35079772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 301
Target Start/End: Complemental strand, 35074911 - 35074803
Alignment:
| Q |
190 |
attataattaacaaaagtgaaatggcaccttcagcttgtttatccgttttgctcgctatttcaatgatctttatttcccatgccatttcactaccaacac |
289 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| | | |||||| |||| || |||||||||||||||||||| |||||| |||| |||||||| |
|
|
| T |
35074911 |
attataattaacaaaatagaaatggcaccttcaacatacttatccttttttatcattatttcaatgatctttatttgtcatgccctttc---accaacac |
35074815 |
T |
|
| Q |
290 |
caagccccaagt |
301 |
Q |
| |
|
||||||| |||| |
|
|
| T |
35074814 |
caagccctaagt |
35074803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 180 - 280
Target Start/End: Complemental strand, 23922858 - 23922757
Alignment:
| Q |
180 |
tctatagttcattataattaacaaaagtgaaa-tggcaccttcagcttgtttatccgttttgctcgctatttcaatgatctttatttcccatgccatttc |
278 |
Q |
| |
|
||||| || |||||||||||||||||| |||| ||||| ||||||| | ||||||| |||||||| | ||||||||||||||| |||| ||||||||||| |
|
|
| T |
23922858 |
tctattgtccattataattaacaaaagagaaaatggcatcttcagcctatttatccattttgctcaccatttcaatgatctttgtttctcatgccatttc |
23922759 |
T |
|
| Q |
279 |
ac |
280 |
Q |
| |
|
|| |
|
|
| T |
23922758 |
ac |
23922757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 301
Target Start/End: Complemental strand, 23915179 - 23915090
Alignment:
| Q |
209 |
aaatggcaccttcagcttgtttatccgttttgctcgctatttcaatgatctttatttcccatgccatttcactaccaacaccaagccccaagt |
301 |
Q |
| |
|
|||||||| ||||| | | ||||||| |||||||| | |||||||||||||||||||||||||||| ||| |||||||||||||| ||||| |
|
|
| T |
23915179 |
aaatggcatcttcaacctatttatccattttgctcaccatttcaatgatctttatttcccatgccaattc---accaacaccaagcctcaagt |
23915090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 280
Target Start/End: Complemental strand, 25803278 - 25803209
Alignment:
| Q |
211 |
atggcaccttcagcttgtttatccgttttgctcgctatttcaatgatctttatttcccatgccatttcac |
280 |
Q |
| |
|
|||||||||||| | | |||||| |||||||| | ||||||||||| |||||||| ||||| ||||||| |
|
|
| T |
25803278 |
atggcaccttcaacatatttatcatttttgctcaccatttcaatgatgtttatttctcatgctatttcac |
25803209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University