View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21538_high_2 (Length: 631)
Name: NF21538_high_2
Description: NF21538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21538_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 19 - 547
Target Start/End: Complemental strand, 7128160 - 7127620
Alignment:
| Q |
19 |
gttatctgccccgtttgttcactctctcttcccgatgataaccgcctcatcaactctcatctcggtaatacttctttcattatcattttttcatttcaat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7128160 |
gttatctgccccgtttgttcactctctcttcccgatgataaccgcctcatcaactctcatctcggtaatacttctttcattatcattttttcatttcaat |
7128061 |
T |
|
| Q |
119 |
tttcaatcaaccacgtctacgtctctgaccgaaggtgtgtctggtatctgatatgtgtctggtgtcaataaatggacagacactagaccactcagataca |
218 |
Q |
| |
|
|||||||||||||||||| | || || |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
7128060 |
tttcaatcaaccacgtctctga-tc-gatcgaaggtgtgtctggtatctgatatgtgtctgatgtcaataaatggaca----ctagaccactcagataca |
7127967 |
T |
|
| Q |
219 |
ttgacactcaataatttgagaaaatcacataattcacacgtgtctgata------------catacatttcaaattaatttgtaa------ttttcattt |
300 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
7127966 |
ttgacacttaataatttgagaaaatgacataattcacacgtgtcagatatcagacactggacatacatttcaaattaatttgtaaatttcattttcattt |
7127867 |
T |
|
| Q |
301 |
caatttttcagattcgtgtctctctgaacctaaacgaagtggaacgaaacgaaaactcacacaacggaccctacttcagttaaacttcacacgccctgat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7127866 |
caatttttcagattcgtgtctctctgaacctaaacgaagtggaacgaaacgaaaactcacacaacggaccctacttcagttaaacttcacacgccctgat |
7127767 |
T |
|
| Q |
401 |
aatctcacacacgagccttcacacgtgtcggatacaacgtgtcaagaacaattagagttctctgaaaatcacagtgttgatgttgatcttgtggattcta |
500 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7127766 |
aatctcacacacgagccttcacacgtgttggatacaacgtgtcaagaacaattagtgttctctgaaaatcacagtgttgatgttgatcttgtggattctg |
7127667 |
T |
|
| Q |
501 |
caattgttgccactgcaacttcttcgtcgctgtccctgaatttcaac |
547 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7127666 |
caattgtagccactgcaacttcttcgtcgctgtccctgaatttcaac |
7127620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University