View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21538_high_21 (Length: 289)

Name: NF21538_high_21
Description: NF21538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21538_high_21
NF21538_high_21
[»] chr5 (7 HSPs)
chr5 (137-289)||(13675561-13675713)
chr5 (11-81)||(13675769-13675839)
chr5 (30-61)||(34159304-34159335)
chr5 (155-188)||(7399757-7399790)
chr5 (17-62)||(7952686-7952731)
chr5 (146-187)||(12854576-12854617)
chr5 (22-63)||(23226733-23226774)
[»] chr2 (3 HSPs)
chr2 (11-62)||(9253250-9253301)
chr2 (11-61)||(14951833-14951883)
chr2 (22-62)||(6424332-6424372)
[»] chr1 (2 HSPs)
chr1 (11-58)||(29570666-29570713)
chr1 (143-196)||(4969357-4969410)
[»] chr8 (2 HSPs)
chr8 (22-64)||(12649628-12649670)
chr8 (11-64)||(2241595-2241648)
[»] chr7 (3 HSPs)
chr7 (30-64)||(41054717-41054751)
chr7 (146-188)||(43575063-43575105)
chr7 (137-185)||(46738268-46738316)
[»] chr4 (3 HSPs)
chr4 (146-187)||(43264342-43264383)
chr4 (154-194)||(26198138-26198178)
chr4 (22-62)||(53563271-53563311)
[»] chr3 (2 HSPs)
chr3 (146-187)||(36546104-36546145)
chr3 (146-187)||(36562169-36562210)


Alignment Details
Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 137 - 289
Target Start/End: Complemental strand, 13675713 - 13675561
Alignment:
Q  137 gaaccgaagtgttaccggaaattaagttaaaggactatatatgtaattttgtaaaaataagggcagctcagtgcactaaatcacagttaactaccatttg 236  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  13675713 gaaccgaagttttaccagaaattaagttaaaggactatatatgtaattttgtaaaaataagggcagcccagtgcactaaatcacagttaactaccatttg 13675614  T
Q  237 ttatctatggcagttaactattgttcgatcaaaggcagagagcgacaagtacc 289  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  13675613 ttatctatggcaattaactattgttcgatcaaaggcagcgagcgacaagtacc 13675561  T

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Target: chr5; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 13675839 - 13675769
Alignment:
Q  11 cataggtgaaggaccatatatttaaagattgagaggccataagaaaataaaacccttagacttgaagcttg 81  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  13675839 cataggtgaaggaccatatatttgaagattgagaggccataagaaaataaaacccttagacttgaagcttg 13675769  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 61
Target Start/End: Complemental strand, 34159335 - 34159304
Alignment:
Q  30 atttaaagattgagaggccataagaaaataaa 61  Q
    ||||||||||||||||||||||||||||||||    
T  34159335 atttaaagattgagaggccataagaaaataaa 34159304  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 7399790 - 7399757
Alignment:
Q  155 aaattaagttaaaggactatatatgtaattttgt 188  Q
    |||||||||||| |||||||||||||||||||||    
T  7399790 aaattaagttaagggactatatatgtaattttgt 7399757  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 7952731 - 7952686
Alignment:
Q  17 tgaaggaccatatatttaaagattgagaggccataagaaaataaaa 62  Q
    |||| ||||||||||||||| ||||||||| |||||||||| ||||    
T  7952731 tgaaagaccatatatttaaaaattgagaggtcataagaaaagaaaa 7952686  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 187
Target Start/End: Complemental strand, 12854617 - 12854576
Alignment:
Q  146 tgttaccggaaattaagttaaaggactatatatgtaattttg 187  Q
    ||||||| |||||||||||||||||||| | |||||||||||    
T  12854617 tgttacctgaaattaagttaaaggactaaaaatgtaattttg 12854576  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 23226774 - 23226733
Alignment:
Q  22 gaccatatatttaaagattgagaggccataagaaaataaaac 63  Q
    ||||||| ||||||||||||| ||| ||||||||||||||||    
T  23226774 gaccatagatttaaagattgaaaggtcataagaaaataaaac 23226733  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 9253250 - 9253301
Alignment:
Q  11 cataggtgaaggaccatatatttaaagattgagaggccataagaaaataaaa 62  Q
    ||||| |||| |||||||||||| |||||||||||||||| |||||| ||||    
T  9253250 catagatgaaagaccatatatttgaagattgagaggccatgagaaaaaaaaa 9253301  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 14951833 - 14951883
Alignment:
Q  11 cataggtgaaggaccatatatttaaagattgagaggccataagaaaataaa 61  Q
    ||||| |||| ||||||  |||| |||||||||||||||||||||||||||    
T  14951833 catagatgaaagaccatgaatttgaagattgagaggccataagaaaataaa 14951883  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 6424372 - 6424332
Alignment:
Q  22 gaccatatatttaaagattgagaggccataagaaaataaaa 62  Q
    ||||||| ||||||||||||||||| | |||||||||||||    
T  6424372 gaccataaatttaaagattgagaggtcgtaagaaaataaaa 6424332  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 29570713 - 29570666
Alignment:
Q  11 cataggtgaaggaccatatatttaaagattgagaggccataagaaaat 58  Q
    |||||||||| ||||||| |||| ||||||||||||| ||||||||||    
T  29570713 cataggtgaaagaccatagatttgaagattgagaggctataagaaaat 29570666  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 4969410 - 4969357
Alignment:
Q  143 aagtgttaccggaaattaagttaaaggactatatatgtaattttgtaaaaataa 196  Q
    ||||||||||  |||||||||||||||||||| ||| ||||||||  |||||||    
T  4969410 aagtgttacctaaaattaagttaaaggactatttatataattttgccaaaataa 4969357  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 12649628 - 12649670
Alignment:
Q  22 gaccatatatttaaagattgagaggccataagaaaataaaacc 64  Q
    ||||| ||||||||||||||| || ||||||||||||||||||    
T  12649628 gaccacatatttaaagattgaaagaccataagaaaataaaacc 12649670  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 2241648 - 2241595
Alignment:
Q  11 cataggtgaaggaccatatatttaaagattgagaggccataagaaaataaaacc 64  Q
    ||||| |||| || |||| |||| ||||||| ||||||||||||||||||||||    
T  2241648 catagatgaaagatcatagatttgaagattgggaggccataagaaaataaaacc 2241595  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 64
Target Start/End: Complemental strand, 41054751 - 41054717
Alignment:
Q  30 atttaaagattgagaggccataagaaaataaaacc 64  Q
    ||||||||||||| |||||||||||||||||||||    
T  41054751 atttaaagattgaaaggccataagaaaataaaacc 41054717  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 188
Target Start/End: Complemental strand, 43575105 - 43575063
Alignment:
Q  146 tgttaccggaaattaagttaaaggactatatatgtaattttgt 188  Q
    ||||||| ||||||||||||| |||||||| ||||||||||||    
T  43575105 tgttacctgaaattaagttaagggactataaatgtaattttgt 43575063  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 46738316 - 46738268
Alignment:
Q  137 gaaccgaagtgttaccggaaattaagttaaaggactatatatgtaattt 185  Q
    ||||| || ||||||| |||||||||||||||||||| | |||||||||    
T  46738316 gaaccaaactgttacctgaaattaagttaaaggactaaaaatgtaattt 46738268  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 187
Target Start/End: Original strand, 43264342 - 43264383
Alignment:
Q  146 tgttaccggaaattaagttaaaggactatatatgtaattttg 187  Q
    ||||||| |||||||||||||||||||| | |||||||||||    
T  43264342 tgttacctgaaattaagttaaaggactaaaaatgtaattttg 43264383  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 194
Target Start/End: Original strand, 26198138 - 26198178
Alignment:
Q  154 gaaattaagttaaaggactatatatgtaattttgtaaaaat 194  Q
    ||||||||||||| |||||||||| ||||||||| ||||||    
T  26198138 gaaattaagttaagggactatataagtaattttgcaaaaat 26198178  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 53563271 - 53563311
Alignment:
Q  22 gaccatatatttaaagattgagaggccataagaaaataaaa 62  Q
    |||||||||||| |||||||||||| | |||||||||||||    
T  53563271 gaccatatatttgaagattgagaggtcctaagaaaataaaa 53563311  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 187
Target Start/End: Complemental strand, 36546145 - 36546104
Alignment:
Q  146 tgttaccggaaattaagttaaaggactatatatgtaattttg 187  Q
    ||||||| |||||||||||||||||||| | |||||||||||    
T  36546145 tgttacctgaaattaagttaaaggactaaaaatgtaattttg 36546104  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 187
Target Start/End: Original strand, 36562169 - 36562210
Alignment:
Q  146 tgttaccggaaattaagttaaaggactatatatgtaattttg 187  Q
    ||||||| |||||||||||||||||||| | |||||||||||    
T  36562169 tgttacctgaaattaagttaaaggactaaaaatgtaattttg 36562210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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