View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21538_high_6 (Length: 569)

Name: NF21538_high_6
Description: NF21538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21538_high_6
NF21538_high_6
[»] chr8 (25 HSPs)
chr8 (1-558)||(19186445-19187002)
chr8 (4-513)||(16005626-16006145)
chr8 (18-478)||(19149534-19149986)
chr8 (8-511)||(15954116-15954618)
chr8 (10-490)||(15982561-15983034)
chr8 (1-511)||(15964061-15964555)
chr8 (249-467)||(15942793-15943011)
chr8 (11-148)||(15941932-15942069)
chr8 (276-460)||(19190283-19190467)
chr8 (339-492)||(16050522-16050675)
chr8 (253-314)||(15977170-15977231)
chr8 (266-467)||(19453833-19454034)
chr8 (266-467)||(19552006-19552207)
chr8 (266-467)||(19580481-19580682)
chr8 (266-467)||(19527040-19527242)
chr8 (107-302)||(16050694-16050888)
chr8 (95-151)||(19338533-19338589)
chr8 (96-151)||(19356561-19356616)
chr8 (96-151)||(19501592-19501647)
chr8 (105-151)||(19378039-19378085)
chr8 (96-151)||(19288785-19288840)
chr8 (105-151)||(19406491-19406537)
chr8 (105-151)||(19538186-19538232)
chr8 (105-151)||(19552478-19552524)
chr8 (105-151)||(19580164-19580210)
[»] chr1 (1 HSPs)
chr1 (105-151)||(36312481-36312527)


Alignment Details
Target: chr8 (Bit Score: 498; Significance: 0; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 1 - 558
Target Start/End: Original strand, 19186445 - 19187002
Alignment:
Q  1 aatactctgatggcgatgatctagaaggcgatttaagaaatgcagatgacctaaaagtgtttagctattcatcaatacttgtggctaccaatggtttttc 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  19186445 aatactctgatggcgatgatctagaaggcgatttaagcaatgcagatgacctaaaagtgtttagctattcatcaatacttgtggctaccaatggcttttc 19186544  T
Q  101 atcagaaaacaagttaggacagggtggctttggacctgtttttaaggtgacatttttgtatagttttgttgaaataaaataagtagacgattaaacagtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19186545 atcagaaaacaagttaggacagggtggctttggacctgtttttaaggtgacatttttgtatagttttgttgaaataaaataagtagacgattaaacagtt 19186644  T
Q  201 aagataatgcattcatcattttattaatgatgcttttatattcaattcagggaattctaccttcggggcaagaagtagctgtgaagaaactttcaaaaac 300  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19186645 aagataatgcattcatcattttattgatgatgcttttatattcaattcagggaattctaccttcggggcaagaagtagctgtgaagaaactttcaaaaac 19186744  T
Q  301 ttctggacaaggaatgacggagtttagaaatgaatcaacactcattagtaagcttcagcatacaaatcttgttcaactaatcggtcattgcattcatgaa 400  Q
     ||||||||||||||||  |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19186745 atctggacaaggaatgattgagtttagaaatgaattaacactcatttgtaagcttcagcatacaaatcttgttcaactaatcggtcattgcattcatgaa 19186844  T
Q  401 catgagcgaatattgatctatgagtatatgccaaacagaagcttggacttctttgtatttggtgagatatattaattgatacaatctcttaaggttgttt 500  Q
    |  ||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||    
T  19186845 cgagagagaatgttgatctatgagtatatgccaaacagaagcttggacttctttttatttggtgaggtatattgattgatacaatctcttaaggttgttt 19186944  T
Q  501 attgaaaatttaatctggtatcaactgtttcatatgttgctaccaactctccattcat 558  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19186945 attgaaaatttaatctggtatcaactgtttcatatgttgctaccaactctccattcat 19187002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 4 - 513
Target Start/End: Original strand, 16005626 - 16006145
Alignment:
Q  4 actctgatggcgatgatctagaaggcgatttaagaaatgcagatgacctaaaagtgtttagctattcatcaatacttgtggctaccaatggtttttcatc 103  Q
    |||||||| ||||||||||||||||| |||| || | || ||||||| |||||||||||||||||||||||||| ||||||| |||||||| ||||| ||    
T  16005626 actctgatagcgatgatctagaaggcaatttcagcagtggagatgacttaaaagtgtttagctattcatcaataattgtggccaccaatggcttttcttc 16005725  T
Q  104 agaaaacaagttaggacagggtggctttggacctgtttttaaggtgacatttttgtatagttt-----tgttgaaataaa-----ataagtagacgatta 193  Q
     ||||||||||||||||| |||||||||| ||||||||||||||||||  |||| ||  ||||     || | ||||||      |||| |  |||||||    
T  16005726 tgaaaacaagttaggacaaggtggctttgaacctgtttttaaggtgaccctttttta--gtttatcagtgataaaataactgcacataactgcacgatta 16005823  T
Q  194 aacagttaagataatgcattcatc-attttattaatgatgcttttatattcaattcagggaattctaccttcggggcaagaagtagctgtgaagaaactt 292  Q
    || |||| |||| ||||||||||| |||||||||||  |  ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  16005824 aatagttgagattatgcattcatccattttattaattttttttttatattcaattcagggaattctaccttcagggcaagaagtagctgtgaagaaactt 16005923  T
Q  293 tcaaaaacttctggacaaggaatgacggagtttagaaatgaatcaacactcattagtaagcttcagcatacaaatcttgttcaactaatcggtcattgca 392  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||  |||||||| |||||||    
T  16005924 tcaaaaacttctggacaaggaatgactgagtttagaaatgaattaacactcattagtaagcttcagcatacgaatcttgttcggctaatcggacattgca 16006023  T
Q  393 ttcatgaacatgagcgaatattgatctatgagtatatgccaaacagaagcttggacttctttgtatttggtgagatatattaattgatacaatctcttaa 492  Q
    |||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||| |||| ||||||||    
T  16006024 ttcatgaacatgagcgtatattgatctatgagtatatgcccaacaaaagcttggacttctttttatttggtgagatatattaattgctacagtctcttaa 16006123  T
Q  493 gg-ttgtttattgaaaatttaa 513  Q
    || |||||||| ||| ||||||    
T  16006124 ggtttgtttatggaatatttaa 16006145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 478
Target Start/End: Complemental strand, 19149986 - 19149534
Alignment:
Q  18 gatctagaaggcgatttaagaaatgcagatgacctaaaagtgtttagctattcatcaatacttgtggctaccaatggtttttcatcagaaaacaagttag 117  Q
    ||||||||||| |||||||| || |  |||||| |||||||||||||||||||||||||| |||||||||||||||| ||||| || |||||||||||||    
T  19149986 gatctagaaggagatttaagcaacggtgatgacttaaaagtgtttagctattcatcaataattgtggctaccaatggcttttcttctgaaaacaagttag 19149887  T
Q  118 gacagggtggctttggacctgtttttaaggtgacatttttgtatagttttgttgaaataaaataagtagacgattaaacagttaagataatgcattcatc 217  Q
    |||| |||||||||||||||||||| ||||||||  |||| ||  |||||| ||| ||       || |    | ||| |||| |||| |||||||||||    
T  19149886 gacaaggtggctttggacctgttttcaaggtgaccctttttta--gttttgctgagatg------gtggctcctgaaatagtttagattatgcattcatc 19149795  T
Q  218 -attttattaatgatgcttttatattcaattcagggaattctaccttcggggcaagaagtagctgtgaagaaactttcaaaaacttctggacaaggaatg 316  Q
     ||||||||||||||  ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19149794 cattttattaatgata-ttttatatttaattcagggaattctaccttcagggcaagaagtagctgtgaagaaactttcaaaaacttctggacaaggaatg 19149696  T
Q  317 acggagtttagaaatgaatcaacactcattagtaagcttcagcatacaaatcttgttcaactaatcggtcattgcattcatgaacatgagcgaatattga 416  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  19149695 acggagtttagaaatgaattaacactcatttgtaagcttcagcatacaaatcttgttcaactaatcggtcattgcattcatgaacaagagcggatattga 19149596  T
Q  417 tctatgagtatatgccaaacagaagcttggacttctttgtatttggtgagatatattaattg 478  Q
    |||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||    
T  19149595 tctatgagtatatgcccaacaaaagcttggacttctttttatttggtgagatatattaattg 19149534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 8 - 511
Target Start/End: Original strand, 15954116 - 15954618
Alignment:
Q  8 tgatggcgatgatctagaaggcgatttaagaaatgcagatgacctaaaagtgtttagctattcatcaatacttgtggctaccaatggtttttcatcagaa 107  Q
    ||||||||| |||||| |||| ||||| || || |  |||||| |||||||||||||||||||||||||| |||||||||||||||| ||||| || |||    
T  15954116 tgatggcgacgatctaaaaggagatttgagcaacggcgatgacttaaaagtgtttagctattcatcaataattgtggctaccaatggcttttcttctgaa 15954215  T
Q  108 aacaagttaggacagggtggctttggacctgtttttaaggtgacatttttgtatagttttgttgaaataaaataagtagacgattaaacagttaagataa 207  Q
    |||||||||||||| |||||||||||||||||||| ||||||||  |||| ||  | ||| |||| |||  |||| |  || || ||| |||| |||| |    
T  15954216 aacaagttaggacaaggtggctttggacctgttttcaaggtgaccctttttta--ggtttattgagatatcataactgcaccatgaaatagttcagatta 15954313  T
Q  208 tgcattcat-cattttattaatgatgcttttatattcaattcagggaattctaccttcggggcaagaagtagctgtgaagaaactttcaaaaacttctgg 306  Q
    || |||||| |||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  15954314 tggattcatacattttattaataatgtttttatattcaattcagggaattctaccttcagggcaagaagtagctgtgaagaaactttcacaaacttctgg 15954413  T
Q  307 acaaggaatgacggagtttagaaatgaatcaacactcattagtaagcttcagcatacaaatcttgttcaactaatcggtcattgcattcatgaacatgag 406  Q
    ||||||||| |  || |||| |||||||| |||||||||| |||||||||||||||||||||||||||  |||||||| ||||||||||||||||| |||    
T  15954414 acaaggaattattgaatttaaaaatgaattaacactcatttgtaagcttcagcatacaaatcttgttcggctaatcggacattgcattcatgaacaagag 15954513  T
Q  407 cgaatattgatctatgagtatatgccaaacagaagcttggacttctttgtatttggtgagatatattaattgatacaatctcttaaggttgtttattgaa 506  Q
    || ||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||| |||||||  |||||||||||||||||||||| |||    
T  15954514 cggatattgatctatgagtatatgcccaacaaaagcttggacttctttttatttggtgagatatgttaattgcgacaatctcttaaggttgtttatggaa 15954613  T
Q  507 aattt 511  Q
     ||||    
T  15954614 tattt 15954618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 10 - 490
Target Start/End: Complemental strand, 15983034 - 15982561
Alignment:
Q  10 atggcgatgatctagaaggcgatttaagaaatgcagatgacctaaaagtgtttagctattcatcaatacttgtggctaccaatggtttttcatcagaaaa 109  Q
    ||||||| ||||||||||| ||||| || || |  |||||| |||||||||||||||||||||||||| |||| ||||||| ||| ||||| || |||||    
T  15983034 atggcgacgatctagaaggagatttgagcaacggcgatgacttaaaagtgtttagctattcatcaataattgttgctaccagtggcttttcttctgaaaa 15982935  T
Q  110 caagttaggacagggtggctttggacctgtttttaaggtgacatttttgtatagttttgttgaaataaaataagtagacgattaaacagttaagataatg 209  Q
    |||||||||||| |||||||||||||||||||| ||||||||  |||| ||  |||||| ||| ||       || |    | ||| |||| |||| |||    
T  15982934 caagttaggacaaggtggctttggacctgttttcaaggtgaccctttttta--gttttgctgagatg------gtggcttctgaaatagtttagattatg 15982843  T
Q  210 cattcatc-attttattaatgatgcttttatattcaattcagggaattctaccttcggggcaagaagtagctgtgaagaaactttcaaaaacttctggac 308  Q
    |||| ||| ||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  15982842 catttatccattttattaatgaagtttttatattcaattcagggaattctaccttcagggcaagaagtagctgtgaagaaactttcaaaaacttctggac 15982743  T
Q  309 aaggaatgacggagtttagaaatgaatcaacactcattagtaagcttcagcatacaaatcttgttcaactaatcggtcattgcattcatgaacatgagcg 408  Q
    |||||||||| |||||||||||||||| ||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  15982742 aaggaatgaccgagtttagaaatgaattaactctcatttgtaagcttcagcataccaatcttgttcaactaatcggtcattgcattcatgaacaagagcg 15982643  T
Q  409 aatattgatctatgagtatatgccaaacagaagcttggacttctttgtatttggtgagatatattaattgatacaatctctt 490  Q
     ||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||| | |||| ||||||    
T  15982642 tatattgatctatgagtatatgcctaacaaaagcttggacttctttttatttggtgagatatattaatagttacattctctt 15982561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 511
Target Start/End: Complemental strand, 15964555 - 15964061
Alignment:
Q  1 aatactctgatggcgatgatctagaaggcgatttaagaaatgcagatgacctaaaagtgtttagctattcatcaatacttgtggctaccaatggtttttc 100  Q
    ||||||||||||| |||||||||||||| ||||| || || | ||||||| |||||||||||| ||||||||||||| ||||||| |||||||| |||||    
T  15964555 aatactctgatggtgatgatctagaaggagatttgagcaacggagatgacttaaaagtgtttacctattcatcaataattgtggcaaccaatggcttttc 15964456  T
Q  101 atcagaaaacaagttaggacagggtggctttggacctgtttttaaggtgaca-tttttgtatagttttgttgaaataaaataagtagacgattaaacagt 199  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||  ||||| |||||||||  |||                ||| |||||||    
T  15964455 atcagaaaacaagttaggacaaggtggctttggacctgttttcaaggtgaccctttttttatagtttttctga----------------gatgaaacagt 15964372  T
Q  200 taagataatgcattcatcattttattaatgatgcttttatattcaattcagggaattctaccttcggggcaagaagtagctgtgaagaaactttcaaaaa 299  Q
    |  ||| ||  | |||||  ||| ||||| ||||||||| ||||||  ||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  15964371 tgcgattattgagtcatcggttttttaat-atgcttttaaattcaacacagggaattctaccttcggagcaagaggtagctgtgaagaaactttcaaaaa 15964273  T
Q  300 cttctggacaaggaatgacggagtttagaaatgaatcaacactcattagtaagcttcagcatacaaatcttgttcaactaatcggtcattgcattcatga 399  Q
    | ||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  15964272 catctggacaaggaatgactgagtttagaaatgaattaacactcatttgtaagcttcagcatacaaatcttgttcggctaatcggtcattgcattcatga 15964173  T
Q  400 acatgagcgaatattgatctatgagtatatgccaaacagaagcttggacttctttgtatttggtgagatatattaattgatacaatctcttaaggttgtt 499  Q
    ||  ||| |||| |||||||||||||||||||| |||| ||| |||||||||||| |||||||||||||||||| |||| |||||| ||||||||||||     
T  15964172 acgagagagaatgttgatctatgagtatatgcccaacaaaagtttggacttctttttatttggtgagatatattgattgctacaatttcttaaggttgtg 15964073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 249 - 467
Target Start/End: Original strand, 15942793 - 15943011
Alignment:
Q  249 agggaattctaccttcggggcaagaagtagctgtgaagaaactttcaaaaacttctggacaaggaatgacggagtttagaaatgaatcaacactcattag 348  Q
    |||||||||||||||| |||||||||||||||||||| | |||||||||| ||||||||||||||||    || |||| |||||||| ||  |||||  |    
T  15942793 agggaattctaccttctgggcaagaagtagctgtgaaaagactttcaaaatcttctggacaaggaattgttgaatttaaaaatgaattaaatctcatatg 15942892  T
Q  349 taagcttcagcatacaaatcttgttcaactaatcggtcattgcattcatgaacatgagcgaatattgatctatgagtatatgccaaacagaagcttggac 448  Q
    |||||| |||||||||||||| ||||| ||||| ||||| |||||||||||||| ||| ||||||| |||||||||||| | ||||| | ||| ||||||    
T  15942893 taagctccagcatacaaatctggttcagctaataggtcactgcattcatgaacaagagagaatattaatctatgagtatcttccaaataaaagtttggac 15942992  T
Q  449 ttctttgtatttggtgaga 467  Q
    |||||| ||||||||||||    
T  15942993 ttctttttatttggtgaga 15943011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 11 - 148
Target Start/End: Original strand, 15941932 - 15942069
Alignment:
Q  11 tggcgatgatctagaaggcgatttaagaaatgcagatgacctaaaagtgtttagctattcatcaatacttgtggctaccaatggtttttcatcagaaaac 110  Q
    |||| ||||||||||||  |||||||| || | ||||||| | ||||| ||||||||||||||||||   || ||||| ||||  |||||||| ||||||    
T  15941932 tggcaatgatctagaagttgatttaagcaaaggagatgacttgaaagtatttagctattcatcaataaaagtagctactaatgacttttcatctgaaaac 15942031  T
Q  111 aagttaggacagggtggctttggacctgtttttaaggt 148  Q
    |||||||||||||||||||||||| | |||||||||||    
T  15942032 aagttaggacagggtggctttggatcggtttttaaggt 15942069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 276 - 460
Target Start/End: Original strand, 19190283 - 19190467
Alignment:
Q  276 tagctgtgaagaaactttcaaaaacttctggacaaggaatgacggagtttagaaatgaatcaacactcattagtaagcttcagcatacaaatcttgttca 375  Q
    |||||||||| | || ||||||| |||||||||||||| | |  || |||||||| |||| |||||||||  | ||||| |||||||||||||| |||||    
T  19190283 tagctgtgaaaagacattcaaaatcttctggacaaggagttattgaatttagaaacgaattaacactcatctgcaagctccagcatacaaatctggttca 19190382  T
Q  376 actaatcggtcattgcattcatgaacatgagcgaatattgatctatgagtatatgccaaacagaagcttggacttctttgtattt 460  Q
     ||    ||||| ||||||||| || | || ||||| ||||||||||||||| || |||| | |||||||||||||||| |||||    
T  19190383 gctgcaaggtcactgcattcataaagaagaacgaatgttgatctatgagtatttgtcaaataaaagcttggacttctttttattt 19190467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 339 - 492
Target Start/End: Complemental strand, 16050675 - 16050522
Alignment:
Q  339 cactcattagtaagcttcagcatacaaatcttgttcaactaatcggtcattgcattcatgaacatgagcgaatattgatctatgagtatatgccaaacag 438  Q
    |||||||| |||||||| |||||||||||   || || ||||| ||||||||  |||||||||| ||| |||| ||||||| | | |||||||| ||||     
T  16050675 cactcatttgtaagcttaagcatacaaattcggtacatctaattggtcattgagttcatgaacaagagagaatgttgatctgtcaatatatgcctaacaa 16050576  T
Q  439 aagcttggacttctttgtatttggtgagatatattaattgatacaatctcttaa 492  Q
    ||||||||| |||||| |||||| ||||| |||||||||| || | ||||||||    
T  16050575 aagcttggagttctttttatttgatgagaaatattaattgctatagtctcttaa 16050522  T

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Target: chr8; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 253 - 314
Target Start/End: Complemental strand, 15977231 - 15977170
Alignment:
Q  253 aattctaccttcggggcaagaagtagctgtgaagaaactttcaaaaacttctggacaaggaa 314  Q
    |||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||    
T  15977231 aattctaccttctgagcaagaagtagctgtgaagaaactttcaagaacttctggacaaggaa 15977170  T

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Target: chr8; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 266 - 467
Target Start/End: Original strand, 19453833 - 19454034
Alignment:
Q  266 gggcaagaagtagctgtgaagaaactttcaaaaacttctggacaaggaatgacggagtttagaaatgaatcaacactcattagtaagcttcagcatacaa 365  Q
    ||||||||||| ||||| || | |||||||||||| |||||||||||||| | ||| || | ||||||||    ||| ||  || | |||||||| ||||    
T  19453833 gggcaagaagttgctgtaaaaagactttcaaaaacatctggacaaggaattatggaattcaaaaatgaattggtacttatatgtgaacttcagcacacaa 19453932  T
Q  366 atcttgttcaactaatcggtcattgcattcatgaacatgagcgaatattgatctatgagtatatgccaaacagaagcttggacttctttgtatttggtga 465  Q
    ||||||| |||||| | |||  ||||||||||||| | ||  | ||  | |||||||| ||||||||||||| ||||||||| |||| | ||||||||||    
T  19453933 atcttgtacaactacttggttgttgcattcatgaagaagaaaggattctaatctatgaatatatgccaaacaaaagcttggatttctatttatttggtga 19454032  T
Q  466 ga 467  Q
    ||    
T  19454033 ga 19454034  T

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Target: chr8; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 266 - 467
Target Start/End: Complemental strand, 19552207 - 19552006
Alignment:
Q  266 gggcaagaagtagctgtgaagaaactttcaaaaacttctggacaaggaatgacggagtttagaaatgaatcaacactcattagtaagcttcagcatacaa 365  Q
    ||||||||||| ||||| || | |||||||||||| ||||||||||||||   ||| || | ||||||||    ||| ||  || | |||||||| | ||    
T  19552207 gggcaagaagttgctgtaaaaagactttcaaaaacatctggacaaggaattgtggaattcaaaaatgaattggtacttatatgtgaacttcagcacaaaa 19552108  T
Q  366 atcttgttcaactaatcggtcattgcattcatgaacatgagcgaatattgatctatgagtatatgccaaacagaagcttggacttctttgtatttggtga 465  Q
    ||||||| |||||| | |||  ||||||||||||| | ||  | ||  |||||||||| ||||||||||||| ||||||||| |||| | ||||||||||    
T  19552107 atcttgtacaactacttggttgttgcattcatgaagaagaaaggattctgatctatgaatatatgccaaacaaaagcttggatttctatctatttggtga 19552008  T
Q  466 ga 467  Q
    ||    
T  19552007 ga 19552006  T

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Target: chr8; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 266 - 467
Target Start/End: Original strand, 19580481 - 19580682
Alignment:
Q  266 gggcaagaagtagctgtgaagaaactttcaaaaacttctggacaaggaatgacggagtttagaaatgaatcaacactcattagtaagcttcagcatacaa 365  Q
    ||||||||||| ||||| || | |||||||||||| ||||||||||||||   ||| || | ||||||||    ||| ||  || | |||||||| | ||    
T  19580481 gggcaagaagttgctgtaaaaagactttcaaaaacatctggacaaggaattgtggaattcaaaaatgaattggtacttatatgtgaacttcagcacaaaa 19580580  T
Q  366 atcttgttcaactaatcggtcattgcattcatgaacatgagcgaatattgatctatgagtatatgccaaacagaagcttggacttctttgtatttggtga 465  Q
    ||||||| |||||| | |||  ||||||||||||| | ||  | ||  |||||||||| ||||||||||||| ||||||||| |||| | ||||||||||    
T  19580581 atcttgtacaactacttggttgttgcattcatgaagaagaaaggattctgatctatgaatatatgccaaacaaaagcttggatttctatctatttggtga 19580680  T
Q  466 ga 467  Q
    ||    
T  19580681 ga 19580682  T

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Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 266 - 467
Target Start/End: Complemental strand, 19527242 - 19527040
Alignment:
Q  266 gggcaagaagtagctgtgaagaaactttcaaaaacttctggacaaggaatgacggagtttagaaatgaatcaacactcatta-gtaagcttcagcataca 364  Q
    ||||||||||| ||||| || | |||||||||||| |||||||||||||| | ||| || | ||||||||    ||| ||   || | |||||||| |||    
T  19527242 gggcaagaagttgctgtaaaaagactttcaaaaacatctggacaaggaattatggaattcaaaaatgaattggtacttatactgtgaacttcagcacaca 19527143  T
Q  365 aatcttgttcaactaatcggtcattgcattcatgaacatgagcgaatattgatctatgagtatatgccaaacagaagcttggacttctttgtatttggtg 464  Q
    |||||||| |||||| | |||  ||||||||||||| | ||  | ||  | |||||||| ||||||||||||| ||||||||| |||| | |||||||||    
T  19527142 aatcttgtacaactacttggttgttgcattcatgaagaagaaaggattctaatctatgaatatatgccaaacaaaagcttggatttctatttatttggtg 19527043  T
Q  465 aga 467  Q
    |||    
T  19527042 aga 19527040  T

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Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 107 - 302
Target Start/End: Complemental strand, 16050888 - 16050694
Alignment:
Q  107 aaacaagttaggacagggtggctttggacctgtttttaaggtgacatttttgtatagttttgttgaaataaaataagtagacgattaaacagttaagata 206  Q
    |||||| |||||||| ||||||||||||||| ||||||||||||   || | | |||| ||||||| ||||||||| |  | ||| ||||| || ||||     
T  16050888 aaacaacttaggacatggtggctttggacctatttttaaggtgagcgttattt-tagtgttgttgagataaaataactgcatgatgaaacaattgagatt 16050790  T
Q  207 atgcattcatcattttattaatgatgcttttatattcaattcagggaattctaccttcggggcaagaagtagctgtgaagaaactttcaaaaactt 302  Q
    ||| | ||||   |||  |||| ||| ||||||||| ||| ||  ||||| ||| ||  ||| ||||||||| |||||||||||||||||||||||    
T  16050789 atgtagtcattggttttataataatgtttttatatttaatacaatgaattatacattgagggtaagaagtagttgtgaagaaactttcaaaaactt 16050694  T

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Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 19338533 - 19338589
Alignment:
Q  95 tttttcatcagaaaacaagttaggacagggtggctttggacctgtttttaaggtgac 151  Q
    ||||||||| |||||||||||||||||||| |||| |||||| |||| |||||||||    
T  19338533 tttttcatctgaaaacaagttaggacagggaggctatggacccgtttataaggtgac 19338589  T

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Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 96 - 151
Target Start/End: Original strand, 19356561 - 19356616
Alignment:
Q  96 ttttcatcagaaaacaagttaggacagggtggctttggacctgtttttaaggtgac 151  Q
    |||||||| |||||||||||||||||||| |||| |||||| |||| |||||||||    
T  19356561 ttttcatctgaaaacaagttaggacagggaggctatggacccgtttataaggtgac 19356616  T

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Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 96 - 151
Target Start/End: Complemental strand, 19501647 - 19501592
Alignment:
Q  96 ttttcatcagaaaacaagttaggacagggtggctttggacctgtttttaaggtgac 151  Q
    |||||| | |||||||||||||||||||| |||| ||||||||||| |||||||||    
T  19501647 ttttcacctgaaaacaagttaggacagggaggctatggacctgtttataaggtgac 19501592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 19378039 - 19378085
Alignment:
Q  105 gaaaacaagttaggacagggtggctttggacctgtttttaaggtgac 151  Q
    |||||||||||||||||||| |||| ||||||||||| |||||||||    
T  19378039 gaaaacaagttaggacagggaggctatggacctgtttataaggtgac 19378085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 151
Target Start/End: Original strand, 19288785 - 19288840
Alignment:
Q  96 ttttcatcagaaaacaagttaggacagggtggctttggacctgtttttaaggtgac 151  Q
    |||||| | |||||||||||||||||||| || | ||||||||||| |||||||||    
T  19288785 ttttcacctgaaaacaagttaggacagggaggttatggacctgtttataaggtgac 19288840  T

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Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 19406491 - 19406537
Alignment:
Q  105 gaaaacaagttaggacagggtggctttggacctgtttttaaggtgac 151  Q
    |||||||||||||||||||| |||| |||||| |||| |||||||||    
T  19406491 gaaaacaagttaggacagggaggctatggaccagtttataaggtgac 19406537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 19538232 - 19538186
Alignment:
Q  105 gaaaacaagttaggacagggtggctttggacctgtttttaaggtgac 151  Q
    |||||||||||||||||||| |||| |||||| |||| |||||||||    
T  19538232 gaaaacaagttaggacagggaggctatggacccgtttataaggtgac 19538186  T

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Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 19552524 - 19552478
Alignment:
Q  105 gaaaacaagttaggacagggtggctttggacctgtttttaaggtgac 151  Q
    |||||||||||||||||||| |||| |||||| |||| |||||||||    
T  19552524 gaaaacaagttaggacagggaggctatggacccgtttataaggtgac 19552478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 19580164 - 19580210
Alignment:
Q  105 gaaaacaagttaggacagggtggctttggacctgtttttaaggtgac 151  Q
    |||||||||||||||||||| |||| |||||| |||| |||||||||    
T  19580164 gaaaacaagttaggacagggaggctatggacccgtttataaggtgac 19580210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 36312527 - 36312481
Alignment:
Q  105 gaaaacaagttaggacagggtggctttggacctgtttttaaggtgac 151  Q
    |||||||||||||||||||| |||| |||||| |||| |||||||||    
T  36312527 gaaaacaagttaggacagggaggctatggacccgtttataaggtgac 36312481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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