View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21538_high_8 (Length: 499)
Name: NF21538_high_8
Description: NF21538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21538_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 18 - 481
Target Start/End: Complemental strand, 1681426 - 1680963
Alignment:
| Q |
18 |
aatactatgatggggggaatgcacagacagactaccctgttactgatcttctgcagatgatgggtcatgccagtcgtcctttggtggaccattctggaaa |
117 |
Q |
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| T |
1681426 |
aatactatgatggggagaatgcacagacagactaccctgttactgatcttctgcagatgatgggtcatgccagtcgtcctttggtggaccattctggaaa |
1681327 |
T |
|
| Q |
118 |
gtgtgtcatcttatgccatgcaccttctaaggagtattacaaaaagtttttgttcgaagcattcccggttgaaagtcatcttcatcactttttacatgat |
217 |
Q |
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| T |
1681326 |
gtgtgtcatcttatgccatgcaccttctaaggagtattacaaaaagtttttgttcgaagcattcccggttgaaagtcatcttcatcactttttacatgat |
1681227 |
T |
|
| Q |
218 |
aatttgaatgctgaaattgttgctggaattattgaaaacaagcaagacgctgtagattatcttacatggacattcatgtacaggcgtctcacccagaatc |
317 |
Q |
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| T |
1681226 |
aatatgaatgctgaaattgttgctggaattattgaaaacaagcaagacgatgtagattatcttacatggacattcatgtacaggcgtctcacccagaatc |
1681127 |
T |
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| Q |
318 |
ccaactattacaatttacaaggagttagtcacaggcatctttctgattacctctctgagttggtggaaaatacattgagtgatttggaagcaagcaagtg |
417 |
Q |
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| T |
1681126 |
ccaactattacaatttacaaggagttagtcacaggcatctttctgattacctctctgagttggtggaaaatacattgagtgatttggaagcaagcaagtg |
1681027 |
T |
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| Q |
418 |
tgtttctatagaggatgatatacatttgtctcctcttaatcttggaatgatatcatcctactat |
481 |
Q |
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| T |
1681026 |
tgtttctatagaggatgatatacatttgtctcctcttaatcttggaatgatatcatcctactat |
1680963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 20 - 481
Target Start/End: Original strand, 2799304 - 2799765
Alignment:
| Q |
20 |
tactatgatggggggaatgcacagacagactaccctgttactgatcttctgcagatgatgggtcatgccagtcgtcctttggtggaccattctggaaagt |
119 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2799304 |
tactatgatggggagaatgcacagacagactaccctgttactgatcttctgcagatgatgggtcatgccagtcgtcctttggtggaccattctggaaagt |
2799403 |
T |
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| Q |
120 |
gtgtcatcttatgccatgcaccttctaaggagtattacaaaaagtttttgttcgaagcattcccggttgaaagtcatcttcatcactttttacatgataa |
219 |
Q |
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| T |
2799404 |
gtgtcatcttatgccatgcaccttctaaggagtattacaaaaagtttttgttcgaagcattcccggttgaaagtcatcttcatcactttttacatgataa |
2799503 |
T |
|
| Q |
220 |
tttgaatgctgaaattgttgctggaattattgaaaacaagcaagacgctgtagattatcttacatggacattcatgtacaggcgtctcacccagaatccc |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2799504 |
tttgaatgctgaaattgttgctggaattattgaaaacaagcaagacgttgttgattatcttacatggacattcatgtacaggcgtctcacccagaatccc |
2799603 |
T |
|
| Q |
320 |
aactattacaatttacaaggagttagtcacaggcatctttctgattacctctctgagttggtggaaaatacattgagtgatttggaagcaagcaagtgtg |
419 |
Q |
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| T |
2799604 |
aactattacaatttacaaggagttagtcacaggcatctttctgattacctctctgagttggtggaaaatacattgagtgatttggaagcaagcaagtgtg |
2799703 |
T |
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| Q |
420 |
tttctatagaggatgatatacatttgtctcctcttaatcttggaatgatatcatcctactat |
481 |
Q |
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| T |
2799704 |
tttctatagaggatgatatacatttgtctcctcttaatcttggaatgatatcatcctactat |
2799765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 34 - 469
Target Start/End: Original strand, 29268494 - 29268929
Alignment:
| Q |
34 |
gaatgcacagacagactaccctgttactgatcttctgcagatgatgggtcatgccagtcgtcctttggtggaccattctggaaagtgtgtcatcttatgc |
133 |
Q |
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|||||| |||||||| ||||||||||||||| | ||||| ||||||||||||||||| |||||||| || ||| |||||||||| ||||||||||||||| |
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| T |
29268494 |
gaatgcccagacagattaccctgttactgatttgctgcaaatgatgggtcatgccagccgtcctttagtagacaattctggaaaatgtgtcatcttatgc |
29268593 |
T |
|
| Q |
134 |
catgcaccttctaaggagtattacaaaaagtttttgttcgaagcattcccggttgaaagtcatcttcatcactttttacatgataatttgaatgctgaaa |
233 |
Q |
| |
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|| |||||| || ||||| ||||| |||||| ||| ||||||||||| |||||||| |||||||||||||| || || || || ||||||||||||| |
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| T |
29268594 |
cacgcacctcgcaaagagtactacaagaagtttctgtatgaagcattcccagttgaaagccatcttcatcacttcttgcacgacaacttgaatgctgaaa |
29268693 |
T |
|
| Q |
234 |
ttgttgctggaattattgaaaacaagcaagacgctgtagattatcttacatggacattcatgtacaggcgtctcacccagaatcccaactattacaattt |
333 |
Q |
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|||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||| |
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| T |
29268694 |
ttgttgctgggattattgaaaacaagcaagatgctgttgattatcttacatggacattcatgtacaggaggctcacacagaatcccaactattacaattt |
29268793 |
T |
|
| Q |
334 |
acaaggagttagtcacaggcatctttctgattacctctctgagttggtggaaaatacattgagtgatttggaagcaagcaagtgtgtttctatagaggat |
433 |
Q |
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| T |
29268794 |
acaaggagtaagtcacagacatctttctgaccacctctcagagatggtggaaaatacattgagcgacttagaagcaagcaagtgtgtttctattgaggat |
29268893 |
T |
|
| Q |
434 |
gatatacatttgtctcctcttaatcttggaatgata |
469 |
Q |
| |
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||||| | | |||||||| || |||||||||||| |
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| T |
29268894 |
gatatggacctttctcctctaaaccttggaatgata |
29268929 |
T |
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