View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21538_low_1 (Length: 742)
Name: NF21538_low_1
Description: NF21538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21538_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 351; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 349 - 723
Target Start/End: Complemental strand, 34771760 - 34771386
Alignment:
| Q |
349 |
ggtaaaagtctatcaagtttggaaagatgtaatgtaacatgtagcatggttgaaatgaacatgatgaacatgaacatgatcatgaaatctaaacacattc |
448 |
Q |
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| T |
34771760 |
ggtaaaagtctatcaagtttggaaagatgtaatgtaacatgtagcatggttgaaatgaacatgatgaacatgaacatgatcatgaaatctaaacacattc |
34771661 |
T |
|
| Q |
449 |
caacnnnnnnnncatcaacaatgaaatgtaagaattgattgaagatgaaaataataaataggtaacaaccatcccaaatattagacatttttcttagaag |
548 |
Q |
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| T |
34771660 |
caacaaaaaaaacatcaacaatgaaatgtaagaattgattgaagatgaaaataataaataggtaacaaccatcccaaatattagacatttttcttagaag |
34771561 |
T |
|
| Q |
549 |
ttgaagagttcaaaagcaaaaaacagaagagtgtgaatgtgaatatgcatatgaatgtgtgtgtgttgaagtaacaatatagagagggaagtaacagtaa |
648 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34771560 |
ttgaagagttcaaaagcaaaaaacagaagagtgtgaatgtgaatatgcatatgaatgtgtgtgtgttgaagtaacaatatagagagggaagtaacagtaa |
34771461 |
T |
|
| Q |
649 |
gaaaaagaggatcaagcaaaaatagatataaatggatttttaagaaacatggtgacatgaaactaacctttacat |
723 |
Q |
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| T |
34771460 |
gaaaaagaggatcaagcaaaaatagatataaatggatttttaagaaacatggtgacatgaaactaacctttacat |
34771386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 87 - 282
Target Start/End: Complemental strand, 34772023 - 34771828
Alignment:
| Q |
87 |
gctacttcatcaccagcttccctctcttcttgctgccatgacttttttggcttttcatgattttctttgcaagacaagcaccatccatcattataattgc |
186 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34772023 |
gctacttcatcaccagcttccctctcttcttgctgccatgacttttttggcttttcatgattttctttgcaagacaagcaccatccatcattataattgc |
34771924 |
T |
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| Q |
187 |
acaagcaggtcatctcatgtctttccctttcataagctgaaacaaaataagattaacaaaattataactcataacaaccaaccatcccagattctc |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34771923 |
acaagcaggtcatctcatgtctttccctttcataagctgaaacaaaataagattaacaaaattataactcataacaaccaaccatcccagattctc |
34771828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 517 - 594
Target Start/End: Complemental strand, 34781161 - 34781083
Alignment:
| Q |
517 |
ccatcccaaatattagacatttttcttagaagttgaagagttcaaaagcaa-aaaacagaagagtgtgaatgtgaatat |
594 |
Q |
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| T |
34781161 |
ccatcccaaatattagacatttttatcagaagttgaagagttcaaaagcaaaaaaacagaagaatgtaaatgtgaatat |
34781083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 644 - 698
Target Start/End: Complemental strand, 34780958 - 34780904
Alignment:
| Q |
644 |
agtaagaaaaagaggatcaagcaaaaatagatataaatggatttttaagaaacat |
698 |
Q |
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| T |
34780958 |
agtaagaaaaagaggatcatgcaaaaatagatataaatggatttttaagaaacat |
34780904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 644 - 698
Target Start/End: Complemental strand, 34795806 - 34795752
Alignment:
| Q |
644 |
agtaagaaaaagaggatcaagcaaaaatagatataaatggatttttaagaaacat |
698 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34795806 |
agtaagaaaaagaggatcatgcaaaaatagatataaatggatttttaagaaacat |
34795752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 580 - 612
Target Start/End: Complemental strand, 34796000 - 34795968
Alignment:
| Q |
580 |
tgtgaatgtgaatatgcatatgaatgtgtgtgt |
612 |
Q |
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| T |
34796000 |
tgtgaatgtgaatatgcatatgaatgtgtgtgt |
34795968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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