View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21538_low_11 (Length: 420)

Name: NF21538_low_11
Description: NF21538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21538_low_11
NF21538_low_11
[»] chr2 (5 HSPs)
chr2 (1-405)||(9043123-9043522)
chr2 (9-101)||(39445814-39445906)
chr2 (14-96)||(45154272-45154354)
chr2 (23-96)||(37847903-37847976)
chr2 (73-115)||(39401458-39401500)
[»] chr3 (3 HSPs)
chr3 (14-115)||(7885903-7886004)
chr3 (9-115)||(53143488-53143594)
chr3 (21-115)||(45707584-45707677)
[»] chr6 (5 HSPs)
chr6 (14-101)||(11703246-11703333)
chr6 (10-115)||(24141326-24141431)
chr6 (14-114)||(31632396-31632496)
chr6 (21-69)||(33099584-33099631)
chr6 (45-96)||(30250274-30250326)
[»] chr5 (7 HSPs)
chr5 (9-123)||(4942486-4942600)
chr5 (14-112)||(30471687-30471785)
chr5 (10-76)||(5367689-5367754)
chr5 (14-115)||(15558531-15558632)
chr5 (14-103)||(39955187-39955277)
chr5 (8-89)||(36974203-36974284)
chr5 (8-76)||(38037351-38037418)
[»] chr4 (6 HSPs)
chr4 (21-115)||(45047203-45047296)
chr4 (1-118)||(25479657-25479773)
chr4 (14-101)||(1586410-1586497)
chr4 (1-76)||(6077973-6078046)
chr4 (24-114)||(46061495-46061585)
chr4 (14-76)||(32212765-32212826)
[»] chr7 (4 HSPs)
chr7 (14-95)||(25795898-25795979)
chr7 (14-76)||(42710562-42710623)
chr7 (10-115)||(34975607-34975710)
chr7 (14-74)||(17603891-17603950)
[»] chr1 (13 HSPs)
chr1 (14-76)||(7789698-7789759)
chr1 (14-103)||(5114088-5114176)
chr1 (1-92)||(5041022-5041113)
chr1 (15-113)||(32913807-32913905)
chr1 (14-112)||(33603521-33603619)
chr1 (14-101)||(33259511-33259597)
chr1 (14-101)||(33279670-33279756)
chr1 (58-113)||(35615614-35615670)
chr1 (14-69)||(7712293-7712347)
chr1 (14-124)||(42483782-42483889)
chr1 (23-76)||(31206422-31206474)
chr1 (11-47)||(8444939-8444975)
chr1 (58-101)||(30335852-30335896)
[»] scaffold0092 (1 HSPs)
scaffold0092 (14-115)||(4892-4994)
[»] chr8 (1 HSPs)
chr8 (14-100)||(1421923-1422008)
[»] scaffold0067 (1 HSPs)
scaffold0067 (14-96)||(228-310)


Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 9043123 - 9043522
Alignment:
Q  1 aaatgacttccatcaataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttcttaaaattggtgtgggatccacttaaaaat 100  Q
    ||||||||||||  ||||||||||||||||||| ||||||||||||  ||||| || ||||||||||||||||||||||| || || |||||||||||||    
T  9043123 aaatgacttccactaataattctttatcatttatatttcaacaaaag-caactcaataatgattattttcttaaaattggcgtagggtccacttaaaaat 9043221  T
Q  101 gaaggttttaagtgaaactctggaatttaagatacctnnnnnnnnntctcaataaattaggtgtccgatcttaaattgcaaagaactatttaggatggtc 200  Q
      ||||||||||||| |||  ||| ||||||||||||         || |||||||||||||||  ||||||||||||||||||||| ||||| ||||||    
T  9043222 agaggttttaagtgagact--ggattttaagatacctaaaaaaaa-tcccaataaattaggtgtgggatcttaaattgcaaagaactgtttag-atggtc 9043317  T
Q  201 taaatacaaactcagaaaataaaaaccacgtatatacatttaagataagattcggatctgtgcaaaaattatgtaacattttttctgtataactaactaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9043318 taaatacaaactcagaaaataaaaaccacgtatatacatttaagataagattcggatctgtgcaaaaattatgtaacattttttctgtataactaactaa 9043417  T
Q  301 caacaaacaatattctaccgcagctcaccaactatcaacaacaaccacccagtgggttaagcaaactctttaaagtatctatctaccaaacaacaagtaa 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  9043418 caacaaacaatattctaccgcagctcaccaactatcaacaacaaccacccagtgggctaagcaaactctttaaagtatctatctaccaaacaaccagtaa 9043517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 39445906 - 39445814
Alignment:
Q  9 tccatcaataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttctt-aaaattggtgtgggatccacttaaaaatg 101  Q
    |||| |||||| ||||||| ||||||||||||||| |||| |||| ||||||||||||||| || |||| | ||||||| ||||||||| ||||    
T  39445906 tccaccaataactctttattatttacatttcaaca-aaaataactaaacaatgattattttattaaaaagttgtgtggggtccacttaagaatg 39445814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 14 - 96
Target Start/End: Complemental strand, 45154354 - 45154272
Alignment:
Q  14 caataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttctt-aaaattggtgtgggatccacttaa 96  Q
    |||||| ||||||| ||||||||||||||| ||||||| | |||||| |||||||| || |||| |||||| || |||||||||    
T  45154354 caataactctttattatttacatttcaaca-aaaacaattcaacaataattattttattaaaaagtggtgtaggttccacttaa 45154272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 96
Target Start/End: Complemental strand, 37847976 - 37847903
Alignment:
Q  23 tttatcatttacatttcaacaaaaaacaacttaacaatgattatttt-cttaaaattggtgtgggatccacttaa 96  Q
    |||||||||||||||| ||| |||||||||| ||| |||||||||||  | |||| ||||||| |||||||||||    
T  37847976 tttatcatttacattttaac-aaaaacaactcaacgatgattattttaataaaaagtggtgtgagatccacttaa 37847903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 115
Target Start/End: Complemental strand, 39401500 - 39401458
Alignment:
Q  73 aaaattggtgtgggatccacttaaaaatgaaggttttaagtga 115  Q
    |||| |||||||  |||||||||||||||||||||||||||||    
T  39401500 aaaagtggtgtgatatccacttaaaaatgaaggttttaagtga 39401458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 7886004 - 7885903
Alignment:
Q  14 caataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttctt-aaaattggtgtgggatccacttaaaaatgaaggttttaag 112  Q
    |||||| ||||||||||||| |||||||| |||| ||||| |||||| |||||||| || |||| | ||||||||||||||||| |||| |||| |||||    
T  7886004 caataactctttatcatttatatttcaac-aaaagcaactcaacaattattattttattaaaaagttgtgtgggatccacttaagaatggaggtcttaag 7885906  T
Q  113 tga 115  Q
    |||    
T  7885905 tga 7885903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 53143594 - 53143488
Alignment:
Q  9 tccatcaataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttctt-aaaattggtgtgggatccacttaaaaatgaaggtt 107  Q
    |||| |||||| |||||||||||||||||||||| ||||  |||| |||||| |||||||| || |||| | ||||||||||||||||| ||||| |  |    
T  53143594 tccaccaataactctttatcatttacatttcaac-aaaagtaactaaacaataattattttattaaaaagttgtgtgggatccacttaagaatgaggtct 53143496  T
Q  108 ttaagtga 115  Q
    ||||||||    
T  53143495 ttaagtga 53143488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 115
Target Start/End: Complemental strand, 45707677 - 45707584
Alignment:
Q  21 tctttatcatttacatttcaacaaaaaacaacttaacaatgattattttcttaa-aattggtgtgggatccacttaaaaatgaaggttttaagtga 115  Q
    |||||||||||||||||||||| |||| ||||| | | || |||||||| |||| || ||||||| |||||||||||||||| |||| ||||||||    
T  45707677 tctttatcatttacatttcaac-aaaagcaactcatcgataattattttattaagaagtggtgtgagatccacttaaaaatg-aggtcttaagtga 45707584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 11703246 - 11703333
Alignment:
Q  14 caataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttctt-aaaattggtgtgggatccacttaaaaatg 101  Q
    |||||| |||||||||||||||||| ||| ||||  |||| ||||||||||||||| || |||| | ||||||||||||||||||||||    
T  11703246 caataactctttatcatttacattttaac-aaaagtaactaaacaatgattattttattaaaaagttgtgtgggatccacttaaaaatg 11703333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 10 - 115
Target Start/End: Complemental strand, 24141431 - 24141326
Alignment:
Q  10 ccatcaataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttctt-aaaattggtgtgggatccacttaaaaatgaaggttt 108  Q
    |||||||||| |||||||||||||||||||||  ||||  |||| ||||||||||||||| || |||| | ||||||   |||||||| ||||||||| |    
T  24141431 ccatcaataactctttatcatttacatttcaa-taaaagtaactaaacaatgattattttattaaaaagttgtgtggagaccacttaagaatgaaggtct 24141333  T
Q  109 taagtga 115  Q
    |||||||    
T  24141332 taagtga 24141326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 114
Target Start/End: Original strand, 31632396 - 31632496
Alignment:
Q  14 caataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttctt-aaaattggtgtgggatccacttaaaaatgaaggttttaag 112  Q
    |||||| |||||||||||||||||||||| |||| ||| | || |||||||||||| || |||| | ||||||||||||||||| ||||  ||| |||||    
T  31632396 caataactctttatcatttacatttcaac-aaaagcaattcaataatgattattttattaaaaaattgtgtgggatccacttaagaatgggggtcttaag 31632494  T
Q  113 tg 114  Q
    ||    
T  31632495 tg 31632496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 33099584 - 33099631
Alignment:
Q  21 tctttatcatttacatttcaacaaaaaacaacttaacaatgattatttt 69  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||    
T  33099584 tctttatcatttacatttcaac-aaaaacaactcaacaatgattatttt 33099631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 30250326 - 30250274
Alignment:
Q  45 aaaacaacttaacaatgattattttctt-aaaattggtgtgggatccacttaa 96  Q
    ||||||||| ||||||||||||||| || |||| ||||||| |||||||||||    
T  30250326 aaaacaactcaacaatgattattttattaaaaagtggtgtgagatccacttaa 30250274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 4942486 - 4942600
Alignment:
Q  9 tccatcaataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttctt-aaaattggtgtgggatccacttaaaaatgaaggtt 107  Q
    |||| |||||| |||||||||||||||||||||| | ||  |||| || |||||||||||| || |||| | ||||||| ||||||||| ||||| |||     
T  4942486 tccaccaataactctttatcatttacatttcaac-ataagtaactaaataatgattattttattaaaaagttgtgtggggtccacttaagaatgagggtc 4942584  T
Q  108 ttaagtgaaactctgg 123  Q
    |||||||| |||||||    
T  4942585 ttaagtgagactctgg 4942600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 112
Target Start/End: Complemental strand, 30471785 - 30471687
Alignment:
Q  14 caataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttctt-aaaattggtgtgggatccacttaaaaatgaaggttttaag 112  Q
    |||||| |||||||||||||||||| ||| ||||  |||| ||||||||||||||| || |||| | ||||||| ||||||||||||||| ||| |||||    
T  30471785 caataactctttatcatttacatttaaac-aaaagtaactaaacaatgattattttattaaaaagttgtgtggggtccacttaaaaatgagggtcttaag 30471687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 5367754 - 5367689
Alignment:
Q  10 ccatcaataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttcttaaaa 76  Q
    |||||||||| |||||||||||||||||||||| ||||  |||| ||||||||||||||| ||||||    
T  5367754 ccatcaataactctttatcatttacatttcaac-aaaagtaactaaacaatgattattttattaaaa 5367689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 15558632 - 15558531
Alignment:
Q  14 caataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttcttaaaat-tggtgtgggatccacttaaaaatgaaggttttaag 112  Q
    |||||| ||||||||||||| |||| |||| ||   |||| ||||||||||||||| ||||||  | |||||||||||| |||||||||||||| |||||    
T  15558632 caataactctttatcatttatattttaacagaagt-aactaaacaatgattattttattaaaaagttgtgtgggatccatttaaaaatgaaggtcttaag 15558534  T
Q  113 tga 115  Q
    |||    
T  15558533 tga 15558531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 39955187 - 39955277
Alignment:
Q  14 caataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttctt--aaaattggtgtgggatccacttaaaaatgaa 103  Q
    |||||| | |||| ||||||||||||||| |||||||||||| |||| |||||||| ||  |||||||||||||| || |||||| ||||||    
T  39955187 caataactatttaccatttacatttcaac-aaaaacaacttaccaataattattttattaaaaaattggtgtggggtctacttaagaatgaa 39955277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 36974203 - 36974284
Alignment:
Q  8 ttccatcaataattctttatcatttacatttcaacaaaaaacaacttaacaatgattatttt-cttaaaattggtgtgggatc 89  Q
    ||||| |||||| |||||||||||||||||||||| |||| ||||| |||||| ||||||||  | |||| ||||||||||||    
T  36974203 ttccaccaataactctttatcatttacatttcaac-aaaagcaactcaacaattattattttaataaaaagtggtgtgggatc 36974284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 38037418 - 38037351
Alignment:
Q  8 ttccatcaataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttcttaaaa 76  Q
    ||||| |||||| |||||||||||||||||| ||  |||| |||| |||||||||||||||| ||||||    
T  38037418 ttccaccaataactctttatcatttacattttaa-taaaagcaacataacaatgattattttattaaaa 38037351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 45047203 - 45047296
Alignment:
Q  21 tctttatcatttacatttcaacaaaaaacaacttaacaatgattattttcttaaaat-tggtgtgggatccacttaaaaatgaaggttttaagtga 115  Q
    |||||||||||||||||||||| ||||| |||| ||||||||||||||| ||||||| | |||||||  |||||||| |||| |||| ||||||||    
T  45047203 tctttatcatttacatttcaac-aaaaataactaaacaatgattattttattaaaatgttgtgtggggcccacttaagaatg-aggtcttaagtga 45047296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 25479773 - 25479657
Alignment:
Q  1 aaatgacttccatcaataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttctt-aaaattggtgtgggatccacttaaaaa 99  Q
    |||||||| ||  |||||| |||||||||||||||||||||| ||||  |||| |||||| | |||||| || |||| ||||||| ||||||||||| ||    
T  25479773 aaatgactccctccaataactctttatcatttacatttcaac-aaaagtaactcaacaattactattttattaaaaagtggtgtgagatccacttaagaa 25479675  T
Q  100 tgaaggttttaagtgaaac 118  Q
    ||  ||| |||||||||||    
T  25479674 tg-gggtcttaagtgaaac 25479657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 1586497 - 1586410
Alignment:
Q  14 caataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttctt-aaaattggtgtgggatccacttaaaaatg 101  Q
    |||||| ||||||||||||||||||||| ||||   || | ||||||||||||||| || |||||| ||||||| ||||||||| ||||    
T  1586497 caataactctttatcatttacatttcaataaaagt-aattaaacaatgattattttattaaaaatttgtgtggggtccacttaagaatg 1586410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 6077973 - 6078046
Alignment:
Q  1 aaatgacttccatcaataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttcttaaaa 76  Q
    |||||| | ||| |||||| ||||| |||||||| |||||||||||| ||||| ||||||||||||||| ||||||    
T  6077973 aaatgagtcccaccaataactctttgtcatttac-tttcaacaaaaa-caactcaacaatgattattttattaaaa 6078046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 114
Target Start/End: Original strand, 46061495 - 46061585
Alignment:
Q  24 ttatcatttacatttcaacaaaaaacaacttaacaatgattattttctt-aaaattggtgtgggatccacttaaaaatgaaggttttaagtg 114  Q
    |||| |||||||||||||||||| | |||| ||||||||||||||| || |||| | |||||| |||||||||| ||||  | |||||||||    
T  46061495 ttattatttacatttcaacaaaaga-aactcaacaatgattattttattaaaaactagtgtggtatccacttaagaatggggattttaagtg 46061585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 32212765 - 32212826
Alignment:
Q  14 caataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttcttaaaa 76  Q
    |||||| |||||||||||||||||||||| |||| ||| | || |||||||||||| ||||||    
T  32212765 caataactctttatcatttacatttcaac-aaaagcaattgaaaaatgattattttattaaaa 32212826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 25795898 - 25795979
Alignment:
Q  14 caataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttctta-aaattggtgtgggatccactta 95  Q
    |||||| |||||||||||||||||||||| ||||| |||| ||||||||||||||| ||| ||| | ||||||| ||||||||    
T  25795898 caataactctttatcatttacatttcaac-aaaaataactaaacaatgattattttattagaaagttgtgtggggtccactta 25795979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 42710562 - 42710623
Alignment:
Q  14 caataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttcttaaaa 76  Q
    |||||| ||||||||||||||||||||||||||   || | ||||||||||||||| ||||||    
T  42710562 caataactctttatcatttacatttcaacaaaagt-aattcaacaatgattattttattaaaa 42710623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 115
Target Start/End: Original strand, 34975607 - 34975710
Alignment:
Q  10 ccatcaataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttcttaaaattggtgtgggatccacttaaaaatgaaggtttt 109  Q
    |||||||||| ||||||||||| | |||||||| |||| ||| | ||||||||| ||||| ||||||  |  ||| ||||||||||| ||||| ||| ||    
T  34975607 ccatcaataactctttatcattaatatttcaac-aaaagcaattcaacaatgatgatttttttaaaa-agtggtgagatccacttaagaatgagggtctt 34975704  T
Q  110 aagtga 115  Q
    ||||||    
T  34975705 aagtga 34975710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 17603891 - 17603950
Alignment:
Q  14 caataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttcttaa 74  Q
    |||||| |||||||||||||||||||||  ||||  |||| ||||||||||||||| ||||    
T  17603891 caataactctttatcatttacatttcaa-taaaagtaactaaacaatgattattttattaa 17603950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 7789759 - 7789698
Alignment:
Q  14 caataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttcttaaaa 76  Q
    |||||| |||||||||||||||||||||| |||| ||||| ||||||||||||||| ||||||    
T  7789759 caataactctttatcatttacatttcaac-aaaagcaactcaacaatgattattttattaaaa 7789698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 5114088 - 5114176
Alignment:
Q  14 caataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttcttaaaattggtgtgggatccacttaaaaatgaa 103  Q
    |||||| |||| ||||||||||||||||| |||||||||| |||||| |||||||| |||||| | ||||| | | ||||||| ||||||    
T  5114088 caataactcttcatcatttacatttcaac-aaaaacaactcaacaataattattttattaaaaattgtgtgaggttcacttaagaatgaa 5114176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 5041022 - 5041113
Alignment:
Q  1 aaatgacttccatcaataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttctt-aaaattggtgtgggatccac 92  Q
    |||||| | ||| |||||| | ||||||||||| ||||||||||||| ||||| ||||||||||||||| || |||| ||| |||||||||||    
T  5041022 aaatgaatcccaccaataactttttatcatttatatttcaacaaaaa-caactcaacaatgattattttattaaaaagtggagtgggatccac 5041113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 113
Target Start/End: Complemental strand, 32913905 - 32913807
Alignment:
Q  15 aataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttctt-aaaattggtgtgggatccacttaaaaatgaaggttttaagt 113  Q
    ||||| |||||||||||||||||||||| |||| ||||| |||| |||||||||| || |||| || || |||| |||||||| |||| |||| ||||||    
T  32913905 aataactctttatcatttacatttcaac-aaaagcaactcaacagtgattattttattaaaaagtgatgcgggacccacttaagaatggaggtcttaagt 32913807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 112
Target Start/End: Original strand, 33603521 - 33603619
Alignment:
Q  14 caataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttctt-aaaattggtgtgggatccacttaaaaatgaaggttttaag 112  Q
    |||||| ||||||||||||||||||||||||||   |||  ||||||||||||||| || |||| || |||| | ||||||||||||||| ||| |||||    
T  33603521 caataactctttatcatttacatttcaacaaaagt-aaccaaacaatgattattttattaaaaagtgatgtgaggtccacttaaaaatgatggtcttaag 33603619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 33259511 - 33259597
Alignment:
Q  14 caataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttctt-aaaattggtgtgggatccacttaaaaatg 101  Q
    |||||||| |||||||||||||||||||| ||||  |||| ||||||| ||||||| || |||| ||||||||| ||||||||| ||||    
T  33259511 caataattttttatcatttacatttcaac-aaaagtaactcaacaatg-ttattttattaaaaagtggtgtggggtccacttaagaatg 33259597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 33279670 - 33279756
Alignment:
Q  14 caataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttctt-aaaattggtgtgggatccacttaaaaatg 101  Q
    |||||||| |||||||||||||||||||| ||||  |||| ||||||| ||||||| || |||| ||||||||| ||||||||| ||||    
T  33279670 caataattttttatcatttacatttcaac-aaaagtaactcaacaatg-ttattttattaaaaagtggtgtggggtccacttaagaatg 33279756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 113
Target Start/End: Original strand, 35615614 - 35615670
Alignment:
Q  58 aatgattattttctt-aaaattggtgtgggatccacttaaaaatgaaggttttaagt 113  Q
    |||||||||||| || |||| ||||||||||||||||||||||||| ||| ||||||    
T  35615614 aatgattattttatttaaaagtggtgtgggatccacttaaaaatgagggtcttaagt 35615670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 7712293 - 7712347
Alignment:
Q  14 caataattctttatcatttacatttcaacaaaaaacaacttaacaatgattatttt 69  Q
    |||||| | |||||||||||||||||||| |||||||||| || ||||||||||||    
T  7712293 caataactttttatcatttacatttcaac-aaaaacaactcaataatgattatttt 7712347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 124
Target Start/End: Original strand, 42483782 - 42483889
Alignment:
Q  14 caataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttcttaaaattggtgtgggatccacttaaaaatgaaggttttaagt 113  Q
    |||||| || |||||||||||||||||||||||| |||    ||||||||||||||  |||||  | ||||||||||| |||| |||||||| | |||||    
T  42483782 caataactcattatcatttacatttcaacaaaaa-caataatacaatgattattttaataaaaa-gttgtgggatccatttaagaatgaagg-tctaagt 42483878  T
Q  114 gaaactctgga 124  Q
    |||||| ||||    
T  42483879 gaaactttgga 42483889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 31206422 - 31206474
Alignment:
Q  23 tttatcatttacatttcaacaaaaaacaacttaacaatgattattttcttaaaa 76  Q
    ||||||||||| |||||||| ||||| |||| ||||||||||||||| ||||||    
T  31206422 tttatcatttatatttcaac-aaaaagaactcaacaatgattattttattaaaa 31206474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 8444975 - 8444939
Alignment:
Q  11 catcaataattctttatcatttacatttcaacaaaaa 47  Q
    ||||||||| ||||||| |||||||||||||||||||    
T  8444975 catcaataactctttattatttacatttcaacaaaaa 8444939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 30335852 - 30335896
Alignment:
Q  58 aatgattattttctt-aaaattggtgtgggatccacttaaaaatg 101  Q
    |||||||||||| || |||| ||||||||||||||||||||||||    
T  30335852 aatgattattttatttaaaagtggtgtgggatccacttaaaaatg 30335896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 4892 - 4994
Alignment:
Q  14 caataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttctt--aaaattggtgtgggatccacttaaaaatgaaggttttaa 111  Q
    |||||| ||||||||||||||| |||||| |||||||||| ||||||||||||||| ||  |||| |||||| ||  |||||||| ||||| | | ||||    
T  4892 caataactctttatcatttacaattcaac-aaaaacaactcaacaatgattattttatttaaaaaatggtgttggggccacttaagaatgaggatcttaa 4990  T
Q  112 gtga 115  Q
    ||||    
T  4991 gtga 4994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 1421923 - 1422008
Alignment:
Q  14 caataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttctt-aaaattggtgtgggatccacttaaaaat 100  Q
    |||||| |||||||||||||||||||||| |||| ||||| ||||||||||| ||| || |||| | ||||||| |||||||||||||    
T  1421923 caataactctttatcatttacatttcaac-aaaagcaactcaacaatgattaatttattaaaaaatagtgtggg-tccacttaaaaat 1422008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 14 - 96
Target Start/End: Complemental strand, 310 - 228
Alignment:
Q  14 caataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttctt-aaaattggtgtgggatccacttaa 96  Q
    |||||| |||||||||||||||||||||  ||||  |||| ||||||||||||||| || |||| | ||||||| |||||||||    
T  310 caataactctttatcatttacatttcaa-taaaagtaactaaacaatgattattttattaaaaagttgtgtggggtccacttaa 228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University