View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21538_low_12 (Length: 419)
Name: NF21538_low_12
Description: NF21538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21538_low_12 |
 | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
| [»] scaffold0184 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 15)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 11 - 397
Target Start/End: Complemental strand, 1969226 - 1968834
Alignment:
| Q |
11 |
caaaggccatgtgattagtggcacaccatgcaacacactctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttagg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1969226 |
caaaggccatgtgattagtggcacaccatgcaacacactctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttagg |
1969127 |
T |
|
| Q |
111 |
atttgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttctctccaagaacccagat------ggtaaaaactgcaaagtgtcaatgt |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
1969126 |
atttgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttctctccaagaacccagatccagatggtaaaaactgcaaagtgtcaatat |
1969027 |
T |
|
| Q |
205 |
cattttctgctgaaagatatcctgcactagatgaactgctactcggtgctcgcaaaacccacgagaattttttattactcaattccaaacctaaagccag |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1969026 |
cattttctgctgaaagatatcctgcactagatgaactgctactcggtgctcgcaaaacccacgagaattttttattactcaattccaaacctaaagccag |
1968927 |
T |
|
| Q |
305 |
ctccacaatttgttcgtgtgaaagtgtaccaccactcccgaaagatacatacaaaactgagcaaggctgctgtttatccaaccaggccagaca |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1968926 |
ctccacaatttgttcgtgtgaaagtgtaccaccactcccgaaagatacatacaaaactgagcaaggctgctgtttatccaaccaggccagaca |
1968834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 14 - 397
Target Start/End: Original strand, 2007798 - 2008181
Alignment:
| Q |
14 |
aggccatgtgattagtggcacaccatgcaacacactctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatt |
113 |
Q |
| |
|
|||||| ||||||| |||||||| |||| ||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
2007798 |
aggccacgtgattaacggcacaccgtgcaccacactctcaagggttgaattccagccacaatgcgtcaagaacccaccaactgagttgtgacttaggatt |
2007897 |
T |
|
| Q |
114 |
tgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttctctccaagaacccagatggtaaaaactgcaaagtgtcaatgtcattttctg |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
2007898 |
tgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttctctccaagaacccagatggtaaaaactgcaaagtgtcaatatcattttctg |
2007997 |
T |
|
| Q |
214 |
ctgaaagatatcctgcactagatgaactgctactcggtgctcgcaaaacccacgagaattttttattactcaattccaaacctaaagccagctccacaat |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
2007998 |
ctgaaagatatcctgcactagatgaactgctactcggtgctcgcaaaacccacaagaattttgtattactcaattccaaacccaaagctagctccacaat |
2008097 |
T |
|
| Q |
314 |
ttgttcgtgtgaaagtgtaccaccactcccgaaagatacatacaaaactgagcaaggctgctgtttatccaaccaggccagaca |
397 |
Q |
| |
|
||| || |||||||||||||| |||||||| ||||||||||||||||| || ||||| |||||||||||||||||||||||||| |
|
|
| T |
2008098 |
ttgctcctgtgaaagtgtacctccactcccaaaagatacatacaaaaccgaacaaggttgctgtttatccaaccaggccagaca |
2008181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 14 - 388
Target Start/End: Original strand, 2004418 - 2004792
Alignment:
| Q |
14 |
aggccatgtgattagtggcacaccatgcaacacactctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatt |
113 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| || || | ||||||||||||||||||| |
|
|
| T |
2004418 |
aggccatgttattagtggcacaccatgcaccacactctctagggttgaattccagccacaatgagtcaagaacccgccgactgagttgtgacttaggatt |
2004517 |
T |
|
| Q |
114 |
tgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttctctccaagaacccagatggtaaaaactgcaaagtgtcaatgtcattttctg |
213 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||| ||||||| || |
|
|
| T |
2004518 |
tgaatctgcggcacccatgatgtaatgacaaaacctttctccttggttctctccaagaacccggatggcaaaaactgccaagtgtcagcatcattttgtg |
2004617 |
T |
|
| Q |
214 |
ctgaaagatatcctgcactagatgaactgctactcggtgctcgcaaaacccacgagaattttttattactcaattccaaacctaaagccagctccacaat |
313 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||| |||||||||||||||||| ||||| | |||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
2004618 |
ctgaaaaatatcctgcactagatgaactactacttggtgctcgcaaaacccacaagaatatcttattactcaattccaaacccaaagccagctcaacaat |
2004717 |
T |
|
| Q |
314 |
ttgttcgtgtgaaagtgtaccaccactcccgaaagatacatacaaaactgagcaaggctgctgtttatccaacca |
388 |
Q |
| |
|
|||||| |||||||||||||| |||||||| ||||| |||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
2004718 |
ttgttcttgtgaaagtgtaccgccactcccaaaagacacatacaaaactgaacaaggttgctgtttatccaacca |
2004792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 14 - 369
Target Start/End: Complemental strand, 1965281 - 1964926
Alignment:
| Q |
14 |
aggccatgtgattagtggcacaccatgcaacacactctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatt |
113 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||| ||||||||||| ||||| ||||| ||| ||||||| || |||||||| | ||||| |||||| |
|
|
| T |
1965281 |
aggccatgtgattagtggcactccatgcaccacactttcaagggttgagttccaaccacagtgactcaagaaccctccaattgaactatgactaaggatt |
1965182 |
T |
|
| Q |
114 |
tgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttctctccaagaacccagatggtaaaaactgcaaagtgtcaatgtcattttctg |
213 |
Q |
| |
|
|||||||| || |||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| | ||||| |||| |||||||| || |
|
|
| T |
1965181 |
tgaatctgaggtgcccatgatgtaatgacaaaacctttctccttcgttctctccaaaaacccagatggtaaaaatttcaaagggtcaccgtcattttgtg |
1965082 |
T |
|
| Q |
214 |
ctgaaagatatcctgcactagatgaactgctactcggtgctcgcaaaacccacgagaattttttattactcaattccaaacctaaagccagctccacaat |
313 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||| ||||||| || |||||| |||||| | |||||||||||| || || | |||||||| ||||| |
|
|
| T |
1965081 |
ctgaaagatatgctgcactagatgaactactacttggtgctcacacaacccataggaatttctgattactcaattctaaccccagagccagctgaacaat |
1964982 |
T |
|
| Q |
314 |
ttgttcgtgtgaaagtgtaccaccactcccgaaagatacatacaaaactgagcaag |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
1964981 |
ttgttcgtgtgaaagtgtaccaccactcccgaaagacacatacaaaactgaacaag |
1964926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 14 - 369
Target Start/End: Original strand, 2011413 - 2011768
Alignment:
| Q |
14 |
aggccatgtgattagtggcacaccatgcaacacactctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatt |
113 |
Q |
| |
|
||||||||||||||||||||| ||||| | |||||| ||||| ||||| |||| ||||| ||| ||||||| || |||| ||| | ||||| |||||| |
|
|
| T |
2011413 |
aggccatgtgattagtggcaccccatgaaccacactttcaagtgttgagctccaaccacagtgactcaagaacccgccaactgaactatgactaaggatt |
2011512 |
T |
|
| Q |
114 |
tgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttctctccaagaacccagatggtaaaaactgcaaagtgtcaatgtcattttctg |
213 |
Q |
| |
|
|||||||| || |||||||||||||| |||||||||| ||| |||||||||||||| ||||||||||||||||| || |||| |||| ||||||| || |
|
|
| T |
2011513 |
tgaatctgaggtgcccatgatgtaatgacaaaaccttcctctttggttctctccaaaaacccagatggtaaaaattgtaaagcatcaacatcattttgtg |
2011612 |
T |
|
| Q |
214 |
ctgaaagatatcctgcactagatgaactgctactcggtgctcgcaaaacccacgagaattttttattactcaattccaaacctaaagccagctccacaat |
313 |
Q |
| |
|
||||||||||| ||||| |||||||||| ||||| |||||||||| |||||| |||||| | |||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
2011613 |
ctgaaagatatgctgcattagatgaactactacttggtgctcgcacaacccataggaatttctgattactcaattccaaacccaaagccagctcaacaat |
2011712 |
T |
|
| Q |
314 |
ttgttcgtgtgaaagtgtaccaccactcccgaaagatacatacaaaactgagcaag |
369 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||||||||||||| |||| |
|
|
| T |
2011713 |
ttgttcgtgtgaaagtgtaccaccactaccgaaagacacatacaaaactgaacaag |
2011768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 14 - 327
Target Start/End: Complemental strand, 2437023 - 2436704
Alignment:
| Q |
14 |
aggccatgtgattagtggcacaccatgcaacacactctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||| ||||||| ||| ||||||| |||||| |
|
|
| T |
2437023 |
aggccatgtgattagtggcacaccatgcaccacactctcaagggttgaattccagccacagtgactcaagaaaccaccaactgatctgtgactaaggatt |
2436924 |
T |
|
| Q |
114 |
tgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttctctccaagaacccagatggtaaaaactgcaaagtgtcaatgtcattttctg |
213 |
Q |
| |
|
|||| ||| || |||||||||| |||||| | |||| |||||||||||||| | ||||||| |||||||||| ||||||| ||||| ||||||| || |
|
|
| T |
2436923 |
tgaacctgtggtgcccatgatggaataaccatcccttgatccttggttctctctatgaacccacatggtaaaaattgcaaagggtcaacatcattttgtg |
2436824 |
T |
|
| Q |
214 |
ctgaaa--ga----tatcctgcactagatgaactgctactcggtgctcgcaaaacccacgagaattttttattactcaattccaaacctaaagccagctc |
307 |
Q |
| |
|
|||||| || ||| |||||||||||||||| ||| | ||||||| | |||||| ||||||| | ||||||| |||||| ||| ||||||||||| |
|
|
| T |
2436823 |
ctgaaactgaaaagtatgctgcactagatgaactactatttggtgctcttacaacccataagaatttctgattactcgattccagaccgaaagccagctc |
2436724 |
T |
|
| Q |
308 |
cacaatttgttcgtgtgaaa |
327 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
2436723 |
aacaatttgttcttgtgaaa |
2436704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 14 - 398
Target Start/End: Original strand, 2014818 - 2015196
Alignment:
| Q |
14 |
aggccatgtgattagtggcacaccatgcaacacactctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||| ||||||| ||| |||||| |||||| |
|
|
| T |
2014818 |
aggccatgtgattagtggcacaccatgcaacacactctcaagcattgaattccaaccacagtgagtcaagaacccaccaactgaactgtgacgaaggatt |
2014917 |
T |
|
| Q |
114 |
tgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttctctccaagaacccagatggtaaaaactgcaaagtgtcaatgtcattttctg |
213 |
Q |
| |
|
|||||||| || |||||||||| |||||| | |||| ||||| ||||||||||||||||| || |||||||| || |||| ||||| ||| || |
|
|
| T |
2014918 |
tgaatctgtggtgcccatgatggaataaccatcccttgttcctttgttctctccaagaaccctgaaggtaaaaattgtaaagggtcaa---catcagatg |
2015014 |
T |
|
| Q |
214 |
ctgaaagatatcctgcactagatgaactgctactcggtgctcgcaaaacccacgagaattttttattactcaattccaaacctaaagccagctccacaat |
313 |
Q |
| |
|
||||||||||| | ||| | | || | |||| |||| || | |||||| ||||||| | |||||||||||||||||| ||||||||||| ||| |
|
|
| T |
2015015 |
ctgaaagatatgcagcattggctg---tattacttggtgatcttacaacccataagaatttatgattactcaattccaaacccaaagccagctcattaat |
2015111 |
T |
|
| Q |
314 |
ttgttcgtgtgaaagtgtaccaccactcccgaaagatacatacaaaactgagcaaggctgctgtttatccaaccaggccagacat |
398 |
Q |
| |
|
|||||| || |||||||| ||||||||||||||||| ||||||| |||||| |||||| | ||||| |||||||| ||||||||| |
|
|
| T |
2015112 |
ttgttcttgcgaaagtgttccaccactcccgaaagacacatacagaactgaacaaggccgttgtttgtccaaccatgccagacat |
2015196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 14 - 397
Target Start/End: Original strand, 2018201 - 2018578
Alignment:
| Q |
14 |
aggccatgtgattagtggcacaccatgcaacacactctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||| ||| |||||| |||||| |
|
|
| T |
2018201 |
aggccatgtgattagtggcacaccatgcaacacactctcaagcgttgaattccaaccacagtgagtcaagaacccaccaactgaactgtgacgaaggatt |
2018300 |
T |
|
| Q |
114 |
tgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttctctccaagaacccagatggtaaaaactgcaaagtgtcaatgtcattttctg |
213 |
Q |
| |
|
|||||||| || |||||||||| |||||| | |||| ||||| |||||||||||||||| || |||||||| || |||| ||||| ||| || |
|
|
| T |
2018301 |
tgaatctgtggtgcccatgatggaataaccatcccttgttccttttttctctccaagaaccctgaaggtaaaaattgtaaagggtcaa---catcagatg |
2018397 |
T |
|
| Q |
214 |
ctgaaagatatcctgcactagatgaactgctactcggtgctcgcaaaacccacgagaattttttattactcaattccaaacctaaagccagctccacaat |
313 |
Q |
| |
|
||||||||||| | ||| | | || | |||| |||| || | |||||| ||||||| | |||||||||||||||||| ||||||||||| ||| |
|
|
| T |
2018398 |
ctgaaagatatgcagcattggctg---tattacttggtgatcttacaacccataagaatttatgattactcaattccaaacccaaagccagctcattaat |
2018494 |
T |
|
| Q |
314 |
ttgttcgtgtgaaagtgtaccaccactcccgaaagatacatacaaaactgagcaaggctgctgtttatccaaccaggccagaca |
397 |
Q |
| |
|
|||||| || |||||||| ||||||||||| ||||| |||||||||||||| |||| |||||||| |||||||| |||||||| |
|
|
| T |
2018495 |
ttgttcttgcgaaagtgtgccaccactcccaaaagaaacatacaaaactgaacaagtttgctgtttgtccaaccatgccagaca |
2018578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 14 - 370
Target Start/End: Complemental strand, 1963611 - 1963261
Alignment:
| Q |
14 |
aggccatgtgattagtggcacaccatgcaacacactctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatt |
113 |
Q |
| |
|
|||||| ||||||||||||||||||| || |||||||||||||||||||||||| |||||||||| ||| || |||||||| || ||||||| |||||| |
|
|
| T |
1963611 |
aggccaagtgattagtggcacaccatacaccacactctcaagggttgaattccaaccacaatgagacaaaaacccaccaatggaactgtgactaaggatt |
1963512 |
T |
|
| Q |
114 |
tgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttctctccaagaacccagatggtaaaaactgcaaagtgtcaatgtcattttctg |
213 |
Q |
| |
|
|||||||| || |||||||||| || ||| | |||| ||||||||||||||||| |||||||||||||||||||| |||| |||| ||| || |
|
|
| T |
1963511 |
tgaatctgtggtgcccatgatggaacaaccatcccttgttccttggttctctccaaaaacccagatggtaaaaactgtaaaggatcaa---catcagatg |
1963415 |
T |
|
| Q |
214 |
ctgaaagatatcctgcactagatgaactgctactcggtgctcgcaaaacccacgagaattttttattactcaattccaaacctaaagccagctccacaat |
313 |
Q |
| |
|
||||||||||| | ||| | | || | ||||| || |||| | |||||| ||||||| | |||||||||||||||||| ||||||| ||| |||| |
|
|
| T |
1963414 |
ctgaaagatatgcagcatttgctg---tactacttggagctcttacaacccataagaatttatgattactcaattccaaacccaaagccaactcatcaat |
1963318 |
T |
|
| Q |
314 |
ttgttcgtgtgaaagtgtaccaccactcccgaaagatacatacaaaactgagcaagg |
370 |
Q |
| |
|
|||||| || |||||||| |||||||| || ||||| |||||||||||||| ||||| |
|
|
| T |
1963317 |
ttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaagg |
1963261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 3770193 - 3770260
Alignment:
| Q |
47 |
actctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggattt |
114 |
Q |
| |
|
||||||||| ||||||||||| |||||||| || || |||||||| |||| |||||||||||||||| |
|
|
| T |
3770193 |
actctcaagtgttgaattccaaccacaatgtgttaaaaatccacctgttgaattgtgacttaggattt |
3770260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 98
Target Start/End: Original strand, 10201869 - 10201937
Alignment:
| Q |
30 |
ggcacaccatgcaacacactctcaagggttgaattccagccacaatgagtcaagaatccaccaattgag |
98 |
Q |
| |
|
|||||||||| || |||||||||||| ||||||||||| ||||||||| ||| || || ||||||||| |
|
|
| T |
10201869 |
ggcacaccattcaccacactctcaagagttgaattccaaccacaatgactcacaaaccctccaattgag |
10201937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 98
Target Start/End: Original strand, 10208942 - 10209010
Alignment:
| Q |
30 |
ggcacaccatgcaacacactctcaagggttgaattccagccacaatgagtcaagaatccaccaattgag |
98 |
Q |
| |
|
|||||||||| || |||||||||||| ||||||||||| ||||||||| ||| || || ||||||||| |
|
|
| T |
10208942 |
ggcacaccattcaccacactctcaagagttgaattccaaccacaatgactcacaaaccctccaattgag |
10209010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 114
Target Start/End: Complemental strand, 3708002 - 3707935
Alignment:
| Q |
47 |
actctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggattt |
114 |
Q |
| |
|
||||||||| || |||||||| |||||||| || || |||||||| |||| |||||||||||||||| |
|
|
| T |
3708002 |
actctcaagcgtcgaattccaaccacaatgtgttaaaaatccacctgttgaattgtgacttaggattt |
3707935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 189
Target Start/End: Original strand, 3777860 - 3778002
Alignment:
| Q |
47 |
actctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatttgaatctgcggcgcccatgatgtaataacaaaa |
146 |
Q |
| |
|
|||||| || || |||||||| |||||||| || || |||||||| |||| |||| |||||||||||| ||||||| ||||| | | || ||| || |
|
|
| T |
3777860 |
actctccagtgtcgaattccaaccacaatgtgttaaaaatccaccggttgaaatgtggcttaggatttgagtctgcggggcccaaaaaggaacaactaac |
3777959 |
T |
|
| Q |
147 |
cctttctccttggttctctccaagaacccagatggtaaaaact |
189 |
Q |
| |
|
|||| || ||||||||||| |||||||| ||||||||||| |
|
|
| T |
3777960 |
ccttgttctttggttctctctaagaacccttgtggtaaaaact |
3778002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 33005106 - 33005188
Alignment:
| Q |
48 |
ctctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatttgaatctgcggcgccca |
130 |
Q |
| |
|
||||| || ||||||||||| |||||||| || || ||||||||| |||| |||| |||||||||||| |||| || ||||| |
|
|
| T |
33005106 |
ctctcgagtgttgaattccaaccacaatgtgttaaaaatccaccagttgaagtgtggcttaggatttgagtctgtggtgccca |
33005188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 11 - 381
Target Start/End: Complemental strand, 5902790 - 5902423
Alignment:
| Q |
11 |
caaaggccatgtgattagtggcacaccatgcaacacactctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttagg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||| ||||||||||||||| ||| ||||||| || |
|
|
| T |
5902790 |
caaaggccatgtgattagtggcacaccatgcatcacactctcaaggattgaattccagccacagtgactcaagaatccaccaactgatctgtgactaagt |
5902691 |
T |
|
| Q |
111 |
atttgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttctctccaagaacccagatggtaaaaactgcaaagtgtcaatgtcatttt |
210 |
Q |
| |
|
||| |||||| || |||||||||| |||||| | |||| |||||||||||||||||||||||||| |||||||||||||||| |||| ||||||| |
|
|
| T |
5902690 |
gtttcaatctgaggtgcccatgatggaataaccatcccttgctccttggttctctccaagaacccaggtggtaaaaactgcaaaagatcaacatcatttt |
5902591 |
T |
|
| Q |
211 |
ctgctgaaagatatcctgcactagatgaactgctactcggtgctcgcaaaacccacgagaattttttattactcaattccaaacctaaagccagctccac |
310 |
Q |
| |
|
|||||||||||||| | |||| | |||| ||||| ||||||| | |||||| ||||||| | |||||||||||||||||| | ||||| ||| | |
|
|
| T |
5902590 |
ctgctgaaagatatgcaccactggctgaa---ctacttggtgctcttacaacccataagaatttatgattactcaattccaaaccaatagccaactcatc |
5902494 |
T |
|
| Q |
311 |
aatttgttcgtgtgaaagtgtaccaccactcccgaaagatacatacaaaactgagcaaggctgctgtttat |
381 |
Q |
| |
|
||||||||| |||||||||| ||||||||| || ||||| |||||||||||||| ||||| || ||||||| |
|
|
| T |
5902493 |
aatttgttcttgtgaaagtgcaccaccacttccaaaagaaacatacaaaactgaacaaggttgttgtttat |
5902423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 14 - 388
Target Start/End: Complemental strand, 5906271 - 5905900
Alignment:
| Q |
14 |
aggccatgtgattagtggcacaccatgcaacacactctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||| | | ||||||||| ||||| |||| ||||||||| ||||||||||||||| ||| ||||||| |||||| |
|
|
| T |
5906271 |
aggccatgtgattagtggcacaccatgcatcgcgctctcaaggattgaactccaaccacaatgactcaagaatccaccaactgatatgtgactaaggatt |
5906172 |
T |
|
| Q |
114 |
tgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttctctccaagaacccagatggtaaaaactgcaaagtgtcaatgtcattttctg |
213 |
Q |
| |
|
| |||||| || |||||||||| |||||| | |||| ||||||||||||||||||||||||||||||||||| |||| || |||| || |||| || |
|
|
| T |
5906171 |
tcaatctgaggtgcccatgatggaataaccattccttgctccttggttctctccaagaacccagatggtaaaacctgcgaaagatcaacatcgttttgtg |
5906072 |
T |
|
| Q |
214 |
ctgaaagatatcctgcactagatgaactgctactcggtgctcgcaaaacccacgagaattttttattactcaattccaaacctaaagccagctccacaat |
313 |
Q |
| |
|
||||||||||| | ||| | |||| ||||| ||||||| | |||||| ||||||| | |||||||||||||||||| | ||| ||||| || | |
|
|
| T |
5906071 |
ctgaaagatatgcaccacatgctgaa---ctacttggtgctcttacaacccataagaatttatgattactcaattccaaaccaatagctagctcatcagt |
5905975 |
T |
|
| Q |
314 |
ttgttcgtgtgaaagtgtaccaccactcccgaaagatacatacaaaactgagcaaggctgctgtttatccaacca |
388 |
Q |
| |
|
|||||| |||||||||| |||||| || || ||||| |||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
5905974 |
ttgttcttgtgaaagtgcaccaccgcttccaaaagaaacatacaaaactgaacaaggctgctgtttatctaacca |
5905900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 97
Target Start/End: Complemental strand, 3557 - 3516
Alignment:
| Q |
56 |
ggttgaattccagccacaatgagtcaagaatccaccaattga |
97 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3557 |
ggttgaattccatccacaatgagtcaagaatccaccaattga |
3516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 4461417 - 4461458
Alignment:
| Q |
56 |
ggttgaattccagccacaatgagtcaagaatccaccaattga |
97 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4461417 |
ggttgaattccatccacaatgagtcaagaatccaccaattga |
4461458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 4622436 - 4622476
Alignment:
| Q |
56 |
ggttgaattccagccacaatgagtcaagaatccaccaattg |
96 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4622436 |
ggttgaattccatccacaatgagtcaagaatccaccaattg |
4622476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 4557419 - 4557460
Alignment:
| Q |
56 |
ggttgaattccagccacaatgagtcaagaatccaccaattga |
97 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4557419 |
ggttgagttccatccacaatgagtcaagaatccaccaattga |
4557460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 4592525 - 4592566
Alignment:
| Q |
56 |
ggttgaattccagccacaatgagtcaagaatccaccaattga |
97 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4592525 |
ggttgagttccatccacaatgagtcaagaatccaccaattga |
4592566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 58 - 97
Target Start/End: Complemental strand, 4490191 - 4490152
Alignment:
| Q |
58 |
ttgaattccagccacaatgagtcaagaatccaccaattga |
97 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4490191 |
ttgagttccatccacaatgagtcaagaatccaccaattga |
4490152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 94
Target Start/End: Complemental strand, 4267004 - 4266966
Alignment:
| Q |
56 |
ggttgaattccagccacaatgagtcaagaatccaccaat |
94 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
4267004 |
ggttgaattccatccgcaatgagtcaagaatccaccaat |
4266966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 97
Target Start/End: Complemental strand, 4299664 - 4299618
Alignment:
| Q |
51 |
tcaagggttgaattccagccacaatgagtcaagaatccaccaattga |
97 |
Q |
| |
|
|||| |||||| ||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
4299664 |
tcaatggttgagttccatccacagtgagtcaagaatccaccaattga |
4299618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 97
Target Start/End: Original strand, 4626240 - 4626286
Alignment:
| Q |
51 |
tcaagggttgaattccagccacaatgagtcaagaatccaccaattga |
97 |
Q |
| |
|
|||| |||||| ||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
4626240 |
tcaatggttgagttccatccacaatgagttaagaatccaccaattga |
4626286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 4493250 - 4493287
Alignment:
| Q |
57 |
gttgaattccagccacaatgagtcaagaatccaccaat |
94 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
4493250 |
gttgagttccatccacaatgagtcaagaatccaccaat |
4493287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 4506151 - 4506192
Alignment:
| Q |
56 |
ggttgaattccagccacaatgagtcaagaatccaccaattga |
97 |
Q |
| |
|
|||||| ||||| || |||||||||||||||||||||||||| |
|
|
| T |
4506151 |
ggttgagttccatccgcaatgagtcaagaatccaccaattga |
4506192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 4585930 - 4585971
Alignment:
| Q |
56 |
ggttgaattccagccacaatgagtcaagaatccaccaattga |
97 |
Q |
| |
|
|||||| ||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
4585930 |
ggttgagttccatccacagtgagtcaagaatccaccaattga |
4585971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 97
Target Start/End: Complemental strand, 4613556 - 4613515
Alignment:
| Q |
56 |
ggttgaattccagccacaatgagtcaagaatccaccaattga |
97 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||| |||||||| |
|
|
| T |
4613556 |
ggttgagttccatccacaatgagtcaagaatccgccaattga |
4613515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 845007 - 845059
Alignment:
| Q |
45 |
acactctcaagggttgaattccagccacaatgagtcaagaatccaccaattga |
97 |
Q |
| |
|
||||| ||||| ||||||||||| ||||||||||| || || ||||||||||| |
|
|
| T |
845007 |
acactttcaagtgttgaattccaaccacaatgagttaaaaacccaccaattga |
845059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 870291 - 870343
Alignment:
| Q |
45 |
acactctcaagggttgaattccagccacaatgagtcaagaatccaccaattga |
97 |
Q |
| |
|
||||| ||||| ||||||||||| ||||||||||| || || ||||||||||| |
|
|
| T |
870291 |
acactttcaagtgttgaattccaaccacaatgagttaaaaacccaccaattga |
870343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 97
Target Start/End: Complemental strand, 41511490 - 41511444
Alignment:
| Q |
51 |
tcaagggttgaattccagccacaatgagtcaagaatccaccaattga |
97 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
41511490 |
tcaagtgttgaattccaaccacaatgagtcaaaaatccaccaattga |
41511444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 3086715 - 3086755
Alignment:
| Q |
57 |
gttgaattccagccacaatgagtcaagaatccaccaattga |
97 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3086715 |
gttgagttccatccacaatgagtcaagaatccaccaattga |
3086755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 97
Target Start/End: Complemental strand, 4529 - 4483
Alignment:
| Q |
51 |
tcaagggttgaattccagccacaatgagtcaagaatccaccaattga |
97 |
Q |
| |
|
|||| |||||| ||||| || |||||||||||||||||||||||||| |
|
|
| T |
4529 |
tcaatggttgagttccatccgcaatgagtcaagaatccaccaattga |
4483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 11635 - 11687
Alignment:
| Q |
45 |
acactctcaagggttgaattccagccacaatgagtcaagaatccaccaattga |
97 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||| ||| |||||||||| |
|
|
| T |
11635 |
acactctcaagaactgaattccaaccacaatgagtcaaaaatgcaccaattga |
11687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 20155290 - 20155250
Alignment:
| Q |
57 |
gttgaattccagccacaatgagtcaagaatccaccaattga |
97 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| |||||||| |
|
|
| T |
20155290 |
gttgaattccatccacaatgtgtcaagaatcctccaattga |
20155250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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