View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21538_low_14 (Length: 385)
Name: NF21538_low_14
Description: NF21538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21538_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 16 - 288
Target Start/End: Complemental strand, 32668825 - 32668553
Alignment:
| Q |
16 |
aagactgattttattagaacgatttgacctacaatgggcaattgtttattcttccacttcaacaatcttgatccgacagcctcaatcactggatgccaag |
115 |
Q |
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|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
32668825 |
aagactaattttattagaacgattcgacctacaatgggcaattgtttattcttccacttcaacaatgttgatctgacagcctcaatcactggatgccaag |
32668726 |
T |
|
| Q |
116 |
tatctaatatcctcagatttgctttgattggtaaaccaagttacttaaacagagtaaatcctattttacattttaatacattagccgcctctcccaccca |
215 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32668725 |
tatctaatatcctcagatttgctctgattggtaaaccaagttacttaaacagagtaaatcctattttacattttaatacattagccgcctctcccaccca |
32668626 |
T |
|
| Q |
216 |
cctctcgaatatattgactccgactaataaacttttatgaaagttcactcacagacccgatattacctcaaat |
288 |
Q |
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||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32668625 |
cctctgggatatattgactccgactaataaacttttatgaaagttcactcatagacccgatattacctcaaat |
32668553 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 286 - 366
Target Start/End: Complemental strand, 32664373 - 32664293
Alignment:
| Q |
286 |
aatagaagcaaatttaccttgatgattatgatatttgaccactttttctcacgaataatcaatgtatcgttggcatattgt |
366 |
Q |
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| T |
32664373 |
aatagaagcaaatttaccttgatgattctgatatttgaccactttttctcacgaataatcaatgtatcgttggcatattgt |
32664293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 355
Target Start/End: Original strand, 27119878 - 27119931
Alignment:
| Q |
302 |
ccttgatgattatgatatttgaccactttttctcacgaataatcaatgtatcgt |
355 |
Q |
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| T |
27119878 |
ccttaatgattatgatattctaccactttttttcaccaataatcaatgtgtcgt |
27119931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 16 - 355
Target Start/End: Original strand, 23703134 - 23703473
Alignment:
| Q |
16 |
aagactgattttattagaacgatttgacctacaatgggcaattgtttattcttccacttcaacaatcttgatccgacagcctcaatcactggatgccaag |
115 |
Q |
| |
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||||||||||||||||||| || | |||| ||||| ||| || |||||||||||||||||||||||||||| ||||||||||||| | ||| | | |
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| T |
23703134 |
aagactgattttattagaatgactctacctccaatgcacaaatgattattcttccacttcaacaatcttgatctcctagcctcaatcactagttgctatg |
23703233 |
T |
|
| Q |
116 |
tatctaatatcctcagatttgctttgattggtaaaccaagttacttaaacagagtaaatcctattttacattttaatacattagccgcctctcccaccca |
215 |
Q |
| |
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|||||||| |||| |||||||| || ||||||||||| |||||||| |||||| ||| ||||||||| |||| || ||||| |||||| ||||||| |
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| T |
23703234 |
tatctaatctcctaggatttgctccaataggtaaaccaagatacttaaatagagtacatcatattttacaatttaggactttagctgcctcttccaccca |
23703333 |
T |
|
| Q |
216 |
cctctcgaatatattgactccgactaataaacttttatgaaagttcactcacagacccgatattacctcaaatagaagcaaatttaccttgatgattatg |
315 |
Q |
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|| | ||||||||||||| || ||| |||||||||||||||| ||| ||||| | ||||| ||||| ||||| |||||| |||| | ||| || |
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| T |
23703334 |
tctttgtgatatattgactcccaccaatgaacttttatgaaagttgacttttagaccaaacattacttcaaaaagaagtaaatttgcctttttaattttg |
23703433 |
T |
|
| Q |
316 |
atatttgaccactttttctcacgaataatcaatgtatcgt |
355 |
Q |
| |
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||||| |||||||||| |||| ||||||||||||||||| |
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| T |
23703434 |
atattcaaccactttttttcactaataatcaatgtatcgt |
23703473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 21 - 190
Target Start/End: Complemental strand, 39294408 - 39294239
Alignment:
| Q |
21 |
tgattttattagaacgatttgacctacaatgggcaattgtttattcttccacttcaacaatcttgatccgacagcctcaatcactggatgccaagtatct |
120 |
Q |
| |
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||||||||||| ||||| | ||||| |||| | || |||||||||||||||||| |||||||||| | || ||||||||||||||||||||||||| | |
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| T |
39294408 |
tgattttattaaaacgactagaccttcaatagacagttgtttattcttccactttgacaatcttgacctcactgcctcaatcactggatgccaagtattt |
39294309 |
T |
|
| Q |
121 |
aatatcctcagatttgctttgattggtaaaccaagttacttaaacagagtaaatcctattttacatttta |
190 |
Q |
| |
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| |||| || || ||||| |||||||||||||| |||||||||| ||| ||||||||||||| |||| |
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| T |
39294308 |
attatcgtcggacttgctccgattggtaaaccaatgtacttaaacatagtggatcctattttacaattta |
39294239 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 121
Target Start/End: Original strand, 22639055 - 22639143
Alignment:
| Q |
33 |
aacgatttgacctacaatgggcaattgtttattcttccacttcaacaatcttgatccgacagcctcaatcactggatgccaagtatcta |
121 |
Q |
| |
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||||| ||||||| |||| ||| ||||||||||||||||| ||||||||||||| | |||| ||||||| | ||||| ||||||| |
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| T |
22639055 |
aacgaattgacctcaaatgaacaagtgtttattcttccacttagacaatcttgatcctagtgccttaatcactagctgccatgtatcta |
22639143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 220
Target Start/End: Original strand, 29122143 - 29122255
Alignment:
| Q |
108 |
atgccaagtatctaatatcctcagatttgctttgattggtaaaccaagttacttaaacagagtaaatcctattttacattttaatacattagccgcctct |
207 |
Q |
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|||||| ||||||||| || || |||||||| || ||||||||||| ||||||||| || || || || ||||| ||||| | ||||||||||||| |
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| T |
29122143 |
atgccatgtatctaatctcttcggatttgctccaatcggtaaaccaaggtacttaaacggaaagaaaccaatcttacaatttaaaatattagccgcctct |
29122242 |
T |
|
| Q |
208 |
cccacccacctct |
220 |
Q |
| |
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||| |||||||| |
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|
| T |
29122243 |
tccaaccacctct |
29122255 |
T |
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