View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21538_low_16 (Length: 358)

Name: NF21538_low_16
Description: NF21538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21538_low_16
NF21538_low_16
[»] chr4 (6 HSPs)
chr4 (1-349)||(54963609-54963959)
chr4 (31-107)||(45204857-45204933)
chr4 (31-108)||(4548210-4548288)
chr4 (31-107)||(436417-436494)
chr4 (31-107)||(23906314-23906391)
chr4 (31-107)||(26037522-26037599)
[»] chr2 (7 HSPs)
chr2 (31-107)||(18959099-18959176)
chr2 (40-107)||(33504421-33504489)
chr2 (31-106)||(39709219-39709295)
chr2 (31-104)||(9496054-9496128)
chr2 (40-100)||(3481351-3481412)
chr2 (31-107)||(31959709-31959786)
chr2 (40-107)||(9531617-9531685)
[»] chr5 (5 HSPs)
chr5 (38-107)||(6859576-6859646)
chr5 (40-107)||(5558338-5558406)
chr5 (31-107)||(38685155-38685232)
chr5 (40-107)||(9235244-9235311)
chr5 (40-107)||(18855804-18855872)
[»] chr6 (5 HSPs)
chr6 (40-107)||(34522-34590)
chr6 (40-107)||(12890772-12890840)
chr6 (31-107)||(5096022-5096099)
chr6 (31-107)||(34934847-34934924)
chr6 (40-107)||(30031453-30031521)
[»] chr8 (5 HSPs)
chr8 (31-108)||(29520837-29520915)
chr8 (38-107)||(35914618-35914688)
chr8 (31-107)||(490523-490600)
chr8 (50-108)||(1313771-1313830)
chr8 (40-104)||(32931157-32931222)
[»] chr7 (8 HSPs)
chr7 (31-107)||(9210721-9210798)
chr7 (31-107)||(36101794-36101871)
chr7 (31-107)||(40979945-40980022)
chr7 (42-107)||(48515370-48515436)
chr7 (31-107)||(28208345-28208422)
chr7 (31-107)||(36652180-36652257)
chr7 (31-107)||(45836499-45836576)
chr7 (40-107)||(2885739-2885807)
[»] scaffold0392 (1 HSPs)
scaffold0392 (40-107)||(6789-6857)
[»] chr3 (9 HSPs)
chr3 (40-107)||(24541349-24541417)
chr3 (40-107)||(48508432-48508500)
chr3 (38-107)||(40991626-40991696)
chr3 (31-84)||(49841804-49841858)
chr3 (31-107)||(2133629-2133706)
chr3 (36-108)||(25191570-25191643)
chr3 (31-107)||(38060902-38060979)
chr3 (44-107)||(48734164-48734228)
chr3 (40-107)||(54128576-54128644)
[»] chr1 (10 HSPs)
chr1 (40-107)||(8796406-8796474)
chr1 (40-107)||(28090711-28090779)
chr1 (31-84)||(6084163-6084217)
chr1 (38-107)||(40568427-40568497)
chr1 (31-107)||(25979248-25979325)
chr1 (31-107)||(38807688-38807765)
chr1 (31-107)||(41560417-41560494)
chr1 (40-107)||(19908052-19908120)
chr1 (40-107)||(37462893-37462961)
chr1 (40-107)||(44941793-44941861)
[»] scaffold0050 (1 HSPs)
scaffold0050 (42-107)||(58243-58309)


Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 54963609 - 54963959
Alignment:
Q  1 tttcttaatttttatgtggtctgagttgatgttgaatcaaaatatggtatatgatagaacatatggcctaattttatccatgtacctcacccaacttagt 100  Q
    ||||||| || |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  54963609 tttcttatttgttatgtggcctgagttgatgttgaagcaaaatatggtatatgatagaacatatggcctaattttatccatgtacctgacccaacttagt 54963708  T
Q  101 gggataa----ttgttgttgt--ttgttgcgatcatttttagatagacaaagttttttggtgtgcgttactttcttgtgcgcatgatccaaattctatca 194  Q
    |||||||    | ||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54963709 gggataagacttagttgttgttgttgttgcgatca-ttttagatagacaaagttttttggtgtgcgttactttcttgtgcgcatgatccaaattctatca 54963807  T
Q  195 agtttcttctattttactttttctctgtatattctaccatgttgtccgggcttttcagtcctcatctttctctatgtatcgtcttctatccatcaaatga 294  Q
    |||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54963808 agt---ttctattttactttttctctgtatattctaccatgttgtccgggcttttcagtcctcatctttctctatgtatcgtcttctatccatcaaatga 54963904  T
Q  295 attcacaaaagggagatgtgtaaccttgttttatttcttatcttcacaggttctg 349  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  54963905 attcacaaaagggagatgtgtaaccttgttttatttcttatctagacaggttctg 54963959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 45204933 - 45204857
Alignment:
Q  31 gttgaatcaaaatatggtatatgatagaacatatggcctaattttatccatgtacctcacccaacttagtgggataa 107  Q
    |||| ||| ||||||||| |||||||||||||  ||| |||||| ||| ||||| | ||||||||||||||||||||    
T  45204933 gttggatccaaatatggtttatgatagaacattaggcgtaatttgatctatgtagcccacccaacttagtgggataa 45204857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 4548210 - 4548288
Alignment:
Q  31 gttgaatcaaaatatggtatatgatagaaca-tatggcctaattttatccatgtacctcacccaacttagtgggataat 108  Q
    |||| ||| |||| |||| |||||||||||| || ||| |||||| ||||||||| |  ||||||||||||||||||||    
T  4548210 gttggatctaaatttggtttatgatagaacactaaggcgtaatttgatccatgtagccaacccaacttagtgggataat 4548288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 436417 - 436494
Alignment:
Q  31 gttgaatcaaaatatggtatatgatagaaca-tatggcctaattttatccatgtacctcacccaacttagtgggataa 107  Q
    |||||||| |||| |||| |||||||||||| |||||| | |||| ||||||||| |  |||| ||||||||||||||    
T  436417 gttgaatccaaatttggtgtatgatagaacactatggcatcatttgatccatgtagccgaccccacttagtgggataa 436494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 23906391 - 23906314
Alignment:
Q  31 gttgaatcaaaatatggtatatgatagaaca-tatggcctaattttatccatgtacctcacccaacttagtgggataa 107  Q
    |||| ||| |||| |||| |||||||||||| |||||| | |||| ||||||||| || |||| ||||||||||||||    
T  23906391 gttggatccaaatttggtgtatgatagaacactatggcgtcatttgatccatgtagctgaccccacttagtgggataa 23906314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 26037599 - 26037522
Alignment:
Q  31 gttgaatcaaaatatggtatatgatagaaca-tatggcctaattttatccatgtacctcacccaacttagtgggataa 107  Q
    |||| ||| ||||||||| |||||||||||| |||||| |||||  ||||||||| |  |||| ||||||||||||||    
T  26037599 gttggatccaaatatggtttatgatagaacactatggcgtaattggatccatgtagccgaccccacttagtgggataa 26037522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 18959099 - 18959176
Alignment:
Q  31 gttgaatcaaaatatggtatatgatagaacat-atggcctaattttatccatgtacctcacccaacttagtgggataa 107  Q
    |||| ||||||||||||| ||||||||||||| ||||| |||||| ||||||||| || |||| ||||||||||||||    
T  18959099 gttggatcaaaatatggtctatgatagaacattatggcataatttgatccatgtagctgaccccacttagtgggataa 18959176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 107
Target Start/End: Original strand, 33504421 - 33504489
Alignment:
Q  40 aaatatggtatatgatagaaca-tatggcctaattttatccatgtacctcacccaacttagtgggataa 107  Q
    |||||||||||||||||||||| |||||| |||||| |||||| || |  |||| ||||||||||||||    
T  33504421 aaatatggtatatgatagaacattatggcgtaatttgatccatctagccgaccccacttagtgggataa 33504489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 106
Target Start/End: Complemental strand, 39709295 - 39709219
Alignment:
Q  31 gttgaatcaaaatatggtatatgatagaaca-tatggcctaattttatccatgtacctcacccaacttagtgggata 106  Q
    |||| ||||||||||||| |||||| ||||| |||||| |||||| ||||||||| |  |||| |||||||||||||    
T  39709295 gttggatcaaaatatggtttatgattgaacactatggcgtaatttgatccatgtagccgaccccacttagtgggata 39709219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 104
Target Start/End: Original strand, 9496054 - 9496128
Alignment:
Q  31 gttgaatcaaaatatggtatatgatagaaca-tatggcctaattttatccatgtacctcacccaacttagtggga 104  Q
    |||| ||| ||||||||| |||||||||||| |||||| |||||| ||||||||| |  |||| |||||||||||    
T  9496054 gttggatccaaatatggtttatgatagaacattatggcgtaatttgatccatgtagccaaccccacttagtggga 9496128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 100
Target Start/End: Original strand, 3481351 - 3481412
Alignment:
Q  40 aaatatggtatatgatagaaca-tatggcctaattttatccatgtacctcacccaacttagt 100  Q
    ||||||||| |||||||||||| |||||| |||||| ||||||||| || |||| |||||||    
T  3481351 aaatatggtctatgatagaacattatggcgtaatttgatccatgtagctgaccccacttagt 3481412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 31959709 - 31959786
Alignment:
Q  31 gttgaatcaaaatatggtatatgatagaaca-tatggcctaattttatccatgtacctcacccaacttagtgggataa 107  Q
    |||| ||| ||||||||| |||||||||||| |||||| |||||| ||||||||| |  |||| ||||||| ||||||    
T  31959709 gttggatccaaatatggtttatgatagaacactatggcataatttgatccatgtagcagaccccacttagtaggataa 31959786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 107
Target Start/End: Complemental strand, 9531685 - 9531617
Alignment:
Q  40 aaatatggtatatgatagaacat-atggcctaattttatccatgtacctcacccaacttagtgggataa 107  Q
    ||||||||| |||||| |||||| ||||| |||||| ||||||||| |  |||| ||||||||||||||    
T  9531685 aaatatggtttatgatggaacattatggcgtaatttgatccatgtagccgaccccacttagtgggataa 9531617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 6859576 - 6859646
Alignment:
Q  38 caaaatatggtatatgatagaacat-atggcctaattttatccatgtacctcacccaacttagtgggataa 107  Q
    ||||||||||| ||||||||||||| ||||| |||||||||||||||  || |||| ||||||||||||||    
T  6859576 caaaatatggtttatgatagaacattatggcataattttatccatgttgctgaccccacttagtgggataa 6859646  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 107
Target Start/End: Original strand, 5558338 - 5558406
Alignment:
Q  40 aaatatggtatatgatagaaca-tatggcctaattttatccatgtacctcacccaacttagtgggataa 107  Q
    ||||||||| |||||||||||| |||||| |||||| ||||||||| |  |||| ||||||||||||||    
T  5558338 aaatatggtttatgatagaacactatggcataatttgatccatgtagccgaccccacttagtgggataa 5558406  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 38685155 - 38685232
Alignment:
Q  31 gttgaatcaaaatatggtatatgatagaac-atatggcctaattttatccatgtacctcacccaacttagtgggataa 107  Q
    |||| ||| ||||||||| ||||||||||| ||||||| | |||| ||||||||| |  |||| ||||||||||||||    
T  38685155 gttggatccaaatatggtttatgatagaacaatatggcgtcatttgatccatgtagccgaccccacttagtgggataa 38685232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 107
Target Start/End: Original strand, 9235244 - 9235311
Alignment:
Q  40 aaatatggtatatgatagaaca-tatggcctaattttatccatgtacctcacccaacttagtgggataa 107  Q
    ||||||||| |||||||||||| |||||| |||||| ||||||||| |  |||| ||||||||||||||    
T  9235244 aaatatggtttatgatagaacattatggcataatttgatccatgtagccgaccc-acttagtgggataa 9235311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 107
Target Start/End: Original strand, 18855804 - 18855872
Alignment:
Q  40 aaatatggtatatgatagaaca-tatggcctaattttatccatgtacctcacccaacttagtgggataa 107  Q
    ||||||||| |||||||||||| ||| || |||||| ||||||||| |  |||| ||||||||||||||    
T  18855804 aaatatggtttatgatagaacattatagcataatttgatccatgtagccgaccccacttagtgggataa 18855872  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 40 - 107
Target Start/End: Complemental strand, 34590 - 34522
Alignment:
Q  40 aaatatggtatatgatagaacat-atggcctaattttatccatgtacctcacccaacttagtgggataa 107  Q
    ||||||||| ||||||||||||| ||||| |||||| ||||||||| || |||| ||||||||||||||    
T  34590 aaatatggtttatgatagaacattatggcgtaatttgatccatgtagctgaccccacttagtgggataa 34522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 107
Target Start/End: Original strand, 12890772 - 12890840
Alignment:
Q  40 aaatatggtatatgatagaaca-tatggcctaattttatccatgtacctcacccaacttagtgggataa 107  Q
    ||||||||| |||||||||||| |||||| |||||| ||||||||| |  |||| ||||||||||||||    
T  12890772 aaatatggtttatgatagaacactatggcgtaatttgatccatgtagccgaccccacttagtgggataa 12890840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 5096022 - 5096099
Alignment:
Q  31 gttgaatcaaaatatggtatatgatagaaca-tatggcctaattttatccatgtacctcacccaacttagtgggataa 107  Q
    |||| ||||||||||||| |||||||||||| |||||| |||||| ||| ||||| |  | || ||||||||||||||    
T  5096022 gttggatcaaaatatggtttatgatagaacattatggcgtaatttgatctatgtagccgatcccacttagtgggataa 5096099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 34934924 - 34934847
Alignment:
Q  31 gttgaatcaaaatatggtatatgatagaaca-tatggcctaattttatccatgtacctcacccaacttagtgggataa 107  Q
    |||| ||| |||| |||| |||||||||||| |||||||| |||| ||||||||| |  |||| ||||||||||||||    
T  34934924 gttggatccaaatttggtgtatgatagaacactatggcctcatttgatccatgtagccgaccccacttagtgggataa 34934847  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 107
Target Start/End: Original strand, 30031453 - 30031521
Alignment:
Q  40 aaatatggtatatgatagaaca-tatggcctaattttatccatgtacctcacccaacttagtgggataa 107  Q
    ||||||||| |||||||||||| |||||| |||||| ||||||||| |  |||  ||||||||||||||    
T  30031453 aaatatggtttatgatagaacactatggcgtaatttgatccatgtagccgacctcacttagtgggataa 30031521  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 29520837 - 29520915
Alignment:
Q  31 gttgaatcaaaatatggtatatgatagaacat-atggcctaattttatccatgtacctcacccaacttagtgggataat 108  Q
    |||| ||| ||||||||| ||||||||||||| ||||| |||||| ||||||||| | ||||| | |||||||||||||    
T  29520837 gttggatccaaatatggtttatgatagaacattatggcgtaatttgatccatgtagcccaccccatttagtgggataat 29520915  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 35914688 - 35914618
Alignment:
Q  38 caaaatatggtatatgatagaaca-tatggcctaattttatccatgtacctcacccaacttagtgggataa 107  Q
    ||||||||||| |||||||||||| |||||| |||||| ||||||||| || |||| |||||||| |||||    
T  35914688 caaaatatggtttatgatagaacattatggcgtaatttgatccatgtagctgaccccacttagtgagataa 35914618  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 490523 - 490600
Alignment:
Q  31 gttgaatcaaaatatggtatatgatagaacat-atggcctaattttatccatgtacctcacccaacttagtgggataa 107  Q
    |||| ||| ||||||||| ||||||||||||| ||||| |||||| ||||||||| |  |||| ||||||||||||||    
T  490523 gttggatccaaatatggtttatgatagaacattatggcgtaatttgatccatgtagccgaccccacttagtgggataa 490600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 1313771 - 1313830
Alignment:
Q  50 tatgatagaacat-atggcctaattttatccatgtacctcacccaacttagtgggataat 108  Q
    ||||||||||||| ||||| ||||||||||||||||  | |||| |||||||||||||||    
T  1313771 tatgatagaacattatggcgtaattttatccatgtagttgaccccacttagtgggataat 1313830  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 32931157 - 32931222
Alignment:
Q  40 aaatatggtatatgatagaaca-tatggcctaattttatccatgtacctcacccaacttagtggga 104  Q
    ||||||||| |||||||||||| |||||| |||||| ||||||||| |  |||| |||||||||||    
T  32931157 aaatatggtgtatgatagaacattatggcataatttgatccatgtagccgaccccacttagtggga 32931222  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 9210798 - 9210721
Alignment:
Q  31 gttgaatcaaaatatggtatatgatagaacat-atggcctaattttatccatgtacctcacccaacttagtgggataa 107  Q
    |||| ||| ||||||||| ||||||| ||||| ||||| |||||| ||||||||| || |||| ||||||||||||||    
T  9210798 gttggatccaaatatggtttatgatacaacattatggcgtaatttgatccatgtagctgaccccacttagtgggataa 9210721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 36101871 - 36101794
Alignment:
Q  31 gttgaatcaaaatatggtatatgatagaaca-tatggcctaattttatccatgtacctcacccaacttagtgggataa 107  Q
    |||| ||||||||||||| |||||||||||| |||| | |||||| |||||||||  | |||| ||||||||||||||    
T  36101871 gttggatcaaaatatggtttatgatagaacattatgacgtaatttgatccatgtagttgaccccacttagtgggataa 36101794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 40980022 - 40979945
Alignment:
Q  31 gttgaatcaaaatatggtatatgatagaaca-tatggcctaattttatccatgtacctcacccaacttagtgggataa 107  Q
    |||| ||| ||||||||| |||||||||||| |||||| |||||| ||||||||| |  |||| ||||||||||||||    
T  40980022 gttggatccaaatatggtttatgatagaacactatggcgtaatttgatccatgtagccgaccccacttagtgggataa 40979945  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 107
Target Start/End: Original strand, 48515370 - 48515436
Alignment:
Q  42 atatggtatatgatagaacat-atggcctaattttatccatgtacctcacccaacttagtgggataa 107  Q
    ||||||| ||||||||||||| ||||| ||||||||| |||||| |   ||||||||||||||||||    
T  48515370 atatggtttatgatagaacattatggcgtaattttattcatgtagccgccccaacttagtgggataa 48515436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 28208422 - 28208345
Alignment:
Q  31 gttgaatcaaaatatggtatatgatagaaca-tatggcctaattttatccatgtacctcacccaacttagtgggataa 107  Q
    |||| ||| ||||||||| |||||||||||| |||||| | |||| ||||||||| |  |||| ||||||||||||||    
T  28208422 gttggatccaaatatggtttatgatagaacactatggcgtcatttgatccatgtagccgaccccacttagtgggataa 28208345  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 36652180 - 36652257
Alignment:
Q  31 gttgaatcaaaatatggtatatgatagaaca-tatggcctaattttatccatgtacctcacccaacttagtgggataa 107  Q
    |||||||| |||| |||| |||||||||||| |||||| | |||| ||||||||| |  |||| ||||||||||||||    
T  36652180 gttgaatccaaatttggtgtatgatagaacactatggcgtcatttgatccatgtagccgaccccacttagtgggataa 36652257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 45836576 - 45836499
Alignment:
Q  31 gttgaatcaaaatatggtatatgatagaaca-tatggcctaattttatccatgtacctcacccaacttagtgggataa 107  Q
    |||| ||| ||||||||| |||||||||||| |||||| | |||| ||||||||| |  |||| ||||||||||||||    
T  45836576 gttggatccaaatatggtttatgatagaacactatggcgtcatttgatccatgtagccgaccccacttagtgggataa 45836499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 107
Target Start/End: Complemental strand, 2885807 - 2885739
Alignment:
Q  40 aaatatggtatatgatagaaca-tatggcctaattttatccatgtacctcacccaacttagtgggataa 107  Q
    ||||||||| |||||||||||| |||||  |||||| ||||||||| |  |||| ||||||||||||||    
T  2885807 aaatatggtttatgatagaacactatggtgtaatttgatccatgtagccgaccccacttagtgggataa 2885739  T

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Target: scaffold0392 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0392
Description:

Target: scaffold0392; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 107
Target Start/End: Complemental strand, 6857 - 6789
Alignment:
Q  40 aaatatggtatatgatagaacat-atggcctaattttatccatgtacctcacccaacttagtgggataa 107  Q
    ||||||||||||||||| ||||| ||||| |||||| ||||||||| |  |||| ||||||||||||||    
T  6857 aaatatggtatatgatataacattatggcataatttgatccatgtagccaaccccacttagtgggataa 6789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 107
Target Start/End: Complemental strand, 24541417 - 24541349
Alignment:
Q  40 aaatatggtatatgatagaacat-atggcctaattttatccatgtacctcacccaacttagtgggataa 107  Q
    ||||||||| || |||||||||| ||||| |||||| |||||||||||  |||| ||||||||||||||    
T  24541417 aaatatggtttaggatagaacattatggcgtaatttgatccatgtacccgaccccacttagtgggataa 24541349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 107
Target Start/End: Original strand, 48508432 - 48508500
Alignment:
Q  40 aaatatggtatatgatagaaca-tatggcctaattttatccatgtacctcacccaacttagtgggataa 107  Q
    ||||||||| |||||||||||| |||||| |||||| ||||||||| |  |||| ||||||||||||||    
T  48508432 aaatatggtttatgatagaacactatggcgtaatttgatccatgtagccgaccccacttagtgggataa 48508500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 40991626 - 40991696
Alignment:
Q  38 caaaatatggtatatgatagaaca-tatggcctaattttatccatgtacctcacccaacttagtgggataa 107  Q
    ||||||||||| |||||||||||| |||||  |||||| ||||||||| || |||| |||||||| |||||    
T  40991626 caaaatatggtttatgatagaacattatggtgtaatttgatccatgtagctgaccccacttagtgagataa 40991696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 49841804 - 49841858
Alignment:
Q  31 gttgaatcaaaatatggtatatgatagaaca-tatggcctaattttatccatgta 84  Q
    |||| ||| |||||||||||||||||||||| |||||| |||||| |||||||||    
T  49841804 gttggatcgaaatatggtatatgatagaacattatggcataatttgatccatgta 49841858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 2133706 - 2133629
Alignment:
Q  31 gttgaatcaaaatatggtatatgatagaaca-tatggcctaattttatccatgtacctcacccaacttagtgggataa 107  Q
    |||||||| |||||| || |||||||||||| |||||| | |||| ||||||||||   |||| ||||||||||||||    
T  2133706 gttgaatccaaatatagtttatgatagaacactatggcgtgatttgatccatgtactcgaccccacttagtgggataa 2133629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 25191570 - 25191643
Alignment:
Q  36 atcaaaatatggtatatgatagaaca-tatggcctaattttatccatgtacctcacccaacttagtgggataat 108  Q
    ||||||||||||| | |||||||||| |||||| | |||| ||||||||| || | || |||||||||||||||    
T  25191570 atcaaaatatggtttttgatagaacactatggcgtcatttgatccatgtagctgatcccacttagtgggataat 25191643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 38060902 - 38060979
Alignment:
Q  31 gttgaatcaaaatatggtatatgatagaacat-atggcctaattttatccatgtacctcacccaacttagtgggataa 107  Q
    |||| ||| ||||||||| ||||||||||||  ||||| |||||| ||||||||| |  |||| ||||||||||||||    
T  38060902 gttggatccaaatatggtttatgatagaacaccatggcgtaatttgatccatgtagccgaccccacttagtgggataa 38060979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 48734228 - 48734164
Alignment:
Q  44 atggtatatgatagaacat-atggcctaattttatccatgtacctcacccaacttagtgggataa 107  Q
    ||||| ||||||||||||| ||||| ||| || ||||||||| || |||| ||||||||||||||    
T  48734228 atggtttatgatagaacattatggcgtaagttgatccatgtagctgaccccacttagtgggataa 48734164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 107
Target Start/End: Original strand, 54128576 - 54128644
Alignment:
Q  40 aaatatggtatatgatagaaca-tatggcctaattttatccatgtacctcacccaacttagtgggataa 107  Q
    ||||||||| |||||||||||| |||||| |||||| |||||||||    |||| ||||||||||||||    
T  54128576 aaatatggtttatgatagaacattatggcataatttgatccatgtaggcgaccccacttagtgggataa 54128644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 107
Target Start/End: Original strand, 8796406 - 8796474
Alignment:
Q  40 aaatatggtatatgatagaacat-atggcctaattttatccatgtacctcacccaacttagtgggataa 107  Q
    ||||||||| ||||||||||||| ||||| |||||| ||||||||| |  |||| ||||||||||||||    
T  8796406 aaatatggtttatgatagaacattatggcgtaatttaatccatgtagccgaccccacttagtgggataa 8796474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 107
Target Start/End: Complemental strand, 28090779 - 28090711
Alignment:
Q  40 aaatatggtatatgatagaacat-atggcctaattttatccatgtacctcacccaacttagtgggataa 107  Q
    ||||||||| ||||||||||||| ||||| |||||| ||||||||| |  |||| ||||||||||||||    
T  28090779 aaatatggtttatgatagaacattatggcgtaatttgatccatgtagccgaccccacttagtgggataa 28090711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 6084163 - 6084217
Alignment:
Q  31 gttgaatcaaaatatggtatatgatagaac-atatggcctaattttatccatgta 84  Q
    |||| ||||||||||||| ||||||||||| ||||||| |||||| |||||||||    
T  6084163 gttggatcaaaatatggtttatgatagaacaatatggcgtaatttgatccatgta 6084217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 40568497 - 40568427
Alignment:
Q  38 caaaatatggtatatgatagaaca-tatggcctaattttatccatgtacctcacccaacttagtgggataa 107  Q
    ||||||||||| |||||||||| | |||||| |||||| ||||||||| |  |||| ||||||||||||||    
T  40568497 caaaatatggtttatgatagaaaactatggcgtaatttgatccatgtagccaaccccacttagtgggataa 40568427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 25979325 - 25979248
Alignment:
Q  31 gttgaatcaaaatatggtatatgatagaaca-tatggcctaattttatccatgtacctcacccaacttagtgggataa 107  Q
    |||| ||| ||||||||| |||||||||||| |||||| | |||| ||||||||| |  |||| ||||||||||||||    
T  25979325 gttggatccaaatatggtttatgatagaacactatggcgtcatttgatccatgtagccgaccccacttagtgggataa 25979248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 38807765 - 38807688
Alignment:
Q  31 gttgaatcaaaatatggtatatgatagaaca-tatggcctaattttatccatgtacctcacccaacttagtgggataa 107  Q
    |||| ||| ||||||||| |||||||||||| |||||| ||||||  |||||||| |  |||| ||||||||||||||    
T  38807765 gttggatccaaatatggtttatgatagaacactatggcgtaatttgttccatgtagccgaccccacttagtgggataa 38807688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 41560417 - 41560494
Alignment:
Q  31 gttgaatcaaaatatggtatatgatagaacat-atggcctaattttatccatgtacctcacccaacttagtgggataa 107  Q
    |||| ||| ||||||||  ||||||||||||| ||||| |||||| ||||||||| |  |||| ||||||||||||||    
T  41560417 gttggatccaaatatgggttatgatagaacattatggcgtaatttgatccatgtagccgaccccacttagtgggataa 41560494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 107
Target Start/End: Complemental strand, 19908120 - 19908052
Alignment:
Q  40 aaatatggtatatgatagaacat-atggcctaattttatccatgtacctcacccaacttagtgggataa 107  Q
    ||||||||| |||||| |||||| || || |||||||||||||||| |  |||| ||||||||||||||    
T  19908120 aaatatggtttatgattgaacattattgcgtaattttatccatgtagccgaccccacttagtgggataa 19908052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 107
Target Start/End: Complemental strand, 37462961 - 37462893
Alignment:
Q  40 aaatatggtatatgatagaacat-atggcctaattttatccatgtacctcacccaacttagtgggataa 107  Q
    ||||||||| ||| ||||||||| ||||| |||||| ||||||||| |  |||| ||||||||||||||    
T  37462961 aaatatggtttatcatagaacattatggcgtaatttgatccatgtagccgaccccacttagtgggataa 37462893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 107
Target Start/End: Complemental strand, 44941861 - 44941793
Alignment:
Q  40 aaatatggtatatgatagaaca-tatggcctaattttatccatgtacctcacccaacttagtgggataa 107  Q
    |||| |||| |||||||||||| |||||| |||||| ||||||||| |  |||| ||||||||||||||    
T  44941861 aaatttggtttatgatagaacactatggcgtaatttgatccatgtagccgaccccacttagtgggataa 44941793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 107
Target Start/End: Complemental strand, 58309 - 58243
Alignment:
Q  42 atatggtatatgatagaacat-atggcctaattttatccatgtacctcacccaacttagtgggataa 107  Q
    ||||||| ||||||||||||| ||| | |||||| ||||||||| |  |||||||||||||||||||    
T  58309 atatggtttatgatagaacattatgtcgtaatttgatccatgtagccgacccaacttagtgggataa 58243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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