View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21538_low_18 (Length: 314)
Name: NF21538_low_18
Description: NF21538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21538_low_18 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 13 - 302
Target Start/End: Complemental strand, 1969521 - 1969232
Alignment:
| Q |
13 |
cagaaactaacacactaaggatttttaagttttcctacaccaaatttctccacttgagtgctatttgagaaatagtttttgtagaagaaccatcttcttt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1969521 |
cagaaactaacacactaaggatttttaagttttcctacaccaaatttctccacttgagtgctatttgagaaatagtttttgtagaagaaccatcttcttt |
1969422 |
T |
|
| Q |
113 |
gattgcatttgaagcagcttcttttaattccttcatgttattgcgcaacttctcaccttcttctccttccatgagacgcttgatcaccttaacaacctct |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1969421 |
gattgcatttgaagcagcttcttttaattccttcatgttattgcgcaacttctcaccttcttctccttccatgagacgcttgatcaccttaacaacctct |
1969322 |
T |
|
| Q |
213 |
tctctttccacaatgccgttttcattaactcttggcctcagtcccacttttatgccttcactcagcaaaacggcattcatttgctgctca |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1969321 |
tctctttccacaatgccgttttcattaactcttggcctcagtcccacttttaggccttcactcagcaaaacggcattcattttctgctca |
1969232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 32 - 302
Target Start/End: Original strand, 2007519 - 2007789
Alignment:
| Q |
32 |
gatttttaagttttcctacaccaaatttctccacttgagtgctatttgagaaatagtttttgtagaagaaccatcttctttgattgcatttgaagcagct |
131 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
2007519 |
gatttttaagtttttctacaccaaatttctccacttaagtgctatttgagaaatagtttttgtagaagaaccatcttctttgactgcatttgaagcagct |
2007618 |
T |
|
| Q |
132 |
tcttttaattccttcatgttattgcgcaacttctcaccttcttctccttccatgagacgcttgatcaccttaacaacctcttctctttccacaatgccgt |
231 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||| || ||||||||||||||| ||||||||||||| |||||||| | |||||||| ||||| | |
|
|
| T |
2007619 |
tcttttaattccttcatgttattgcgtaatttctcaccctcgtctccttccatgagatacttgatcaccttagcaacctctaccctttccactatgccat |
2007718 |
T |
|
| Q |
232 |
tttcattaactcttggcctcagtcccacttttatgccttcactcagcaaaacggcattcatttgctgctca |
302 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||| |||||||||| |||||| |||||||||| ||||||| |
|
|
| T |
2007719 |
tttcattaacacttgccctcagtcccacttttagtccttcactcaacaaaaccgcattcattttctgctca |
2007789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 34 - 302
Target Start/End: Original strand, 2004141 - 2004409
Alignment:
| Q |
34 |
tttttaagttttcctacaccaaatttctccacttgagtgctatttgagaaatagtttttgtagaagaaccatcttctttgattgcatttgaagcagcttc |
133 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||| ||||||| ||| |
|
|
| T |
2004141 |
tttttaggttttcctacactaaatttctccacttgagtgctaattgagaaatagtgtttgtagaagaaccatcttctttgacagcattcgaagcagattc |
2004240 |
T |
|
| Q |
134 |
ttttaattccttcatgttattgcgcaacttctcaccttcttctccttccatgagacgcttgatcaccttaacaacctcttctctttccacaatgccgttt |
233 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||| |||||||| | |||||||| ||||| ||| |
|
|
| T |
2004241 |
ttttaattccttcatgttattgcgcaatttctcaccttcttccccttccatgagacacttgatcaccttagcaacctctaccctttccactatgccattt |
2004340 |
T |
|
| Q |
234 |
tcattaactcttggcctcagtcccacttttatgccttcactcagcaaaacggcattcatttgctgctca |
302 |
Q |
| |
|
|||||||| |||| ||||| ||||||||||| |||||||||| |||||| |||||||||| ||||||| |
|
|
| T |
2004341 |
tcattaacacttgccctcaatcccacttttagtccttcactcaacaaaaccgcattcattttctgctca |
2004409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 41 - 293
Target Start/End: Original strand, 2011143 - 2011395
Alignment:
| Q |
41 |
gttttcctacaccaaatttctccacttgagtgctatttgagaaatagtttttgtagaagaaccatcttctttgattgcatttgaagcagcttcttttaat |
140 |
Q |
| |
|
||||| || ||||||||||||||||||||||| || |||||||||||| ||||||||||| ||||||||||||| |||||| |||||| ||||||||||| |
|
|
| T |
2011143 |
gtttttctgcaccaaatttctccacttgagtgttaattgagaaatagtctttgtagaagatccatcttctttgagtgcattagaagcaacttcttttaat |
2011242 |
T |
|
| Q |
141 |
tccttcatgttattgcgcaacttctcaccttcttctccttccatgagacgcttgatcaccttaacaacctcttctctttccacaatgccgttttcattaa |
240 |
Q |
| |
|
|||||||| |||||| |||| ||||||| ||||||||||||||||||||||||||||||||| ||||||| | ||||| ||||| || ||||| |||| |
|
|
| T |
2011243 |
tccttcatattattgtgcaatttctcacactcttctccttccatgagacgcttgatcaccttagcaacctccaccctttcgacaataccattttcgttaa |
2011342 |
T |
|
| Q |
241 |
ctcttggcctcagtcccacttttatgccttcactcagcaaaacggcattcatt |
293 |
Q |
| |
|
|||||||||||||||||||||| | ||| ||| ||| |||||| ||||||||| |
|
|
| T |
2011343 |
ctcttggcctcagtcccactttaaggccctcagtcaccaaaactgcattcatt |
2011395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 40 - 293
Target Start/End: Complemental strand, 1965552 - 1965299
Alignment:
| Q |
40 |
agttttcctacaccaaatttctccacttgagtgctatttgagaaatagtttttgtagaagaaccatcttctttgattgcatttgaagcagcttcttttaa |
139 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| || |||||| ||||| ||||||||||| ||||||||||||| |||||| |||||| || ||||||| |
|
|
| T |
1965552 |
agttttcctgcaccaaatttctccacttgagtgttaattgagatatagtctttgtagaagatccatcttctttgagtgcattggaagcaactccttttaa |
1965453 |
T |
|
| Q |
140 |
ttccttcatgttattgcgcaacttctcaccttcttctccttccatgagacgcttgatcaccttaacaacctcttctctttccacaatgccgttttcatta |
239 |
Q |
| |
|
|||||||| |||||| |||| ||||||| ||||||||||||||||||| ||||||||||||| ||||||| | ||||| ||||| |||||||| ||| |
|
|
| T |
1965452 |
ctccttcatattattgtgcaatttctcacactcttctccttccatgagacacttgatcaccttagcaacctccaccctttcgacaataccgttttcgtta |
1965353 |
T |
|
| Q |
240 |
actcttggcctcagtcccacttttatgccttcactcagcaaaacggcattcatt |
293 |
Q |
| |
|
|||||||| |||||||||||||| | ||| || ||| |||||| ||||||||| |
|
|
| T |
1965352 |
actcttggtctcagtcccactttaaggcccccagtcaccaaaactgcattcatt |
1965299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 41 - 283
Target Start/End: Complemental strand, 2437287 - 2437051
Alignment:
| Q |
41 |
gttttcctacaccaaatttctccacttgagtgctatttgagaaatagtttttgtagaagaaccatcttctttgattgcatttgaagcagcttcttttaat |
140 |
Q |
| |
|
|||||||| |||||| ||||||||||||||| || |||||||||||| ||||| ||||||||||||||||||| |||||| |||||||||||||||| | |
|
|
| T |
2437287 |
gttttcctgcaccaagcttctccacttgagtgttaattgagaaatagtctttgtcgaagaaccatcttctttgagtgcattagaagcagcttcttttagt |
2437188 |
T |
|
| Q |
141 |
tccttcatgttattgcgcaacttctcaccttcttctccttccatgagacgcttgatcaccttaacaacctcttctctttccacaatgccgttttcattaa |
240 |
Q |
| |
|
|| ||||| ||| | | |||| |||||||||||||||||||| ||||||||||||| |||||||| | |||||||||||||| ||||||| || |
|
|
| T |
2437187 |
tctttcatattactcc---actttag---ttcttctccttccatgagacacttgatcaccttagcaacctctaccctttccacaatgccattttcatgaa |
2437094 |
T |
|
| Q |
241 |
ctcttggcctcagtcccacttttatgccttcactcagcaaaac |
283 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||| |||||| |
|
|
| T |
2437093 |
ctcttggcctcagtcccacttttagtccctcactcaacaaaac |
2437051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 60 - 289
Target Start/End: Complemental strand, 1963862 - 1963633
Alignment:
| Q |
60 |
ctccacttgagtgctatttgagaaatagtttttgtagaagaaccatcttctttgattgcatttgaagcagcttcttttaattccttcatgttattgcgca |
159 |
Q |
| |
|
|||||||||||||||| |||||||| ||| ||||||| ||||||||||||||| | || | |||||||||||| ||||||||||| ||||| |||| |
|
|
| T |
1963862 |
ctccacttgagtgctaattgagaaagagtctttgtagtagaaccatcttctttatgtacactactagcagcttctttaaattccttcatattattacgca |
1963763 |
T |
|
| Q |
160 |
acttctcaccttcttctccttccatgagacgcttgatcaccttaacaacctcttctctttccacaatgccgttttcattaactcttggcctcagtcccac |
259 |
Q |
| |
|
||| |||||||||| ||||||||||||| |||||||| || | ||| ||| | |||||||||||||| || || ||||||||||||||||||||||| |
|
|
| T |
1963762 |
gtttcccaccttcttccccttccatgagacacttgatcaactcagcaatttctaccctttccacaatgccattctcgttaactcttggcctcagtcccac |
1963663 |
T |
|
| Q |
260 |
ttttatgccttcactcagcaaaacggcatt |
289 |
Q |
| |
|
||||| |||||||| |||||||| ||||| |
|
|
| T |
1963662 |
ttttaggccttcacagagcaaaactgcatt |
1963633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 41 - 290
Target Start/End: Original strand, 2017931 - 2018180
Alignment:
| Q |
41 |
gttttcctacaccaaatttctccacttgagtgctatttgagaaatagtttttgtagaagaaccatcttctttgattgcatttgaagcagcttcttttaat |
140 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||| |||||||| || |||||| |||| ||||| ||||| |||| | ||||| |||||||||| |
|
|
| T |
2017931 |
gtttttctataccaaatttctccacttgagtgctaattgagaaagtgtctttgtaaaagatccatcatctttatgtgcactattagcagattcttttaat |
2018030 |
T |
|
| Q |
141 |
tccttcatgttattgcgcaacttctcaccttcttctccttccatgagacgcttgatcaccttaacaacctcttctctttccacaatgccgttttcattaa |
240 |
Q |
| |
|
|||||||| || ||||||| ||| |||||||||| ||||||||||||| |||||| | || ||| | | | ||||||||||||| || | ||||| |
|
|
| T |
2018031 |
tccttcatatttttgcgcagtttcccaccttcttccccttccatgagacacttgattaactctgcaatttgtaccttttccacaatgccattctgattaa |
2018130 |
T |
|
| Q |
241 |
ctcttggcctcagtcccacttttatgccttcactcagcaaaacggcattc |
290 |
Q |
| |
|
| ||||||||||||||||||||| |||||||||| |||||| |||||| |
|
|
| T |
2018131 |
tttttggcctcagtcccacttttagtccttcactcaacaaaaccgcattc |
2018180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 125 - 290
Target Start/End: Original strand, 2014632 - 2014797
Alignment:
| Q |
125 |
agcagcttcttttaattccttcatgttattgcgcaacttctcaccttcttctccttccatgagacgcttgatcaccttaacaacctcttctctttccaca |
224 |
Q |
| |
|
||||| |||||||||||||||||| || ||||||| ||| |||||||||| ||||||||||||| |||||| | || ||| | | | |||||||| |
|
|
| T |
2014632 |
agcagattcttttaattccttcatatttttgcgcagtttcccaccttcttccccttccatgagacacttgattaactctgcaatttgtaccttttccaca |
2014731 |
T |
|
| Q |
225 |
atgccgttttcattaactcttggcctcagtcccacttttatgccttcactcagcaaaacggcattc |
290 |
Q |
| |
|
||||| || | ||||| | ||||||||||||||||||||| |||||||||| |||||| |||||| |
|
|
| T |
2014732 |
atgccattctgattaatttttggcctcagtcccacttttagtccttcactcaacaaaaccgcattc |
2014797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 23269133 - 23269096
Alignment:
| Q |
90 |
tttgtagaagaaccatcttctttgattgcatttgaagc |
127 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
23269133 |
tttgtagaagaaccatcttctttgagtgcattagaagc |
23269096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 8e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 40 - 302
Target Start/End: Complemental strand, 5906542 - 5906280
Alignment:
| Q |
40 |
agttttcctacaccaaatttctccacttgagtgctatttgagaaatagtttttgtagaagaaccatcttctttgattgcatttgaagcagcttcttttaa |
139 |
Q |
| |
|
||||||| | |||||||||| |||||||| |||||| |||||||| ||| ||| ||||||| |||||||||| | |||||| | ||| |||||||| || |
|
|
| T |
5906542 |
agttttcatgcaccaaatttttccacttgtgtgctaattgagaaacagtctttctagaagacccatcttcttgaagtgcattagtagctgcttctttcaa |
5906443 |
T |
|
| Q |
140 |
ttccttcatgttattgcgcaacttctcaccttcttctccttccatgagacgcttgatcaccttaacaacctcttctctttccacaatgccgttttcatta |
239 |
Q |
| |
|
||||||||| ||||||||||| ||||||| |||||| ||||||||||||| ||||||||||||| ||||||| |||||||||||||| ||||||||| |
|
|
| T |
5906442 |
ttccttcatattattgcgcaatttctcacattcttccccttccatgagacacttgatcaccttagaaacctctatcctttccacaatgccattttcatta |
5906343 |
T |
|
| Q |
240 |
actcttggcctcagtcccacttttatgccttcactcagcaaaacggcattcatttgctgctca |
302 |
Q |
| |
|
||||||||||||| |||||| |||| ||| |||||||||| || ||||||||| ||||||| |
|
|
| T |
5906342 |
actcttggcctcactcccacctttaggccctcactcagcacaaatgcattcattctctgctca |
5906280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 40 - 293
Target Start/End: Complemental strand, 5903058 - 5902805
Alignment:
| Q |
40 |
agttttcctacaccaaatttctccacttgagtgctatttgagaaatagtttttgtagaagaaccatcttctttgattgcatttgaagcagcttcttttaa |
139 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||| ||||||||| || ||| ||||||| || |||||||||| ||||| | || |||||||||||| |
|
|
| T |
5903058 |
agttttcatgcaccaaatttctccacttgagtgctaattgagaaatggtctttctagaagacccgtcttctttgagcgcattagtagaagcttcttttaa |
5902959 |
T |
|
| Q |
140 |
ttccttcatgttattgcgcaacttctcaccttcttctccttccatgagacgcttgatcaccttaacaacctcttctctttccacaatgccgttttcatta |
239 |
Q |
| |
|
||||||||| ||||||||||| ||||||| |||||||||||||||||||| |||||||| ||| || || || ||||| |||||||| || |||||| |
|
|
| T |
5902958 |
ttccttcatattattgcgcaaattctcacattcttctccttccatgagacccttgatcaatttagaaatttcctccctttcaacaatgccattatcatta |
5902859 |
T |
|
| Q |
240 |
actcttggcctcagtcccacttttatgccttcactcagcaaaacggcattcatt |
293 |
Q |
| |
|
|| |||||||||||||||||||| | ||| |||||||||| ||| ||||||||| |
|
|
| T |
5902858 |
acccttggcctcagtcccactttaaggccctcactcagcacaactgcattcatt |
5902805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 56 - 127
Target Start/End: Original strand, 5890603 - 5890674
Alignment:
| Q |
56 |
atttctccacttgagtgctatttgagaaatagtttttgtagaagaaccatcttctttgattgcatttgaagc |
127 |
Q |
| |
|
|||||||||||||||||||| |||||||| | | ||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
5890603 |
atttctccacttgagtgctaattgagaaaaaatgtttgtagaagaaccatcttctttgagtgcattagaagc |
5890674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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