View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21538_low_19 (Length: 308)
Name: NF21538_low_19
Description: NF21538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21538_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 295
Target Start/End: Original strand, 2318664 - 2318944
Alignment:
| Q |
15 |
acaatgtgttgtcaaatagcggcgctttaaca-tagaatttgatcaaaatgttatttttcgcaatccacaatggacaacattgattaagacttacctaat |
113 |
Q |
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| T |
2318664 |
acaatgcgttgtcaaatagcggcgctgtaacaatagaattcaaacaaaatgcgattttttgcaatccacaatggacaacattgattaagacttacctaat |
2318763 |
T |
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| Q |
114 |
tgataaccttatattcattttcacgcggaaaaaatgagacaatgttgtttgatgaatccnnnnnnnnnnnnnnnggcaacccgagtataaagctcccgca |
213 |
Q |
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| T |
2318764 |
tgataaccttatattcattttcacgcggaaaaaatgagacaatgttgtttgatgaatcc-aaaaaaaaaaaaaaggcaacccgagtataaagctcccgca |
2318862 |
T |
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| Q |
214 |
tatctgtgaaggggtcccactgttcacagccttagcttgttttttcagtgacatgacaacaactttaaggtagacagaaatt |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2318863 |
tatctgtgaaggggtcccactgttcacagccttagcttgttttttcagtgacatgacaacaactttaaggtagacagaaatt |
2318944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 2309529 - 2309615
Alignment:
| Q |
15 |
acaatgtgttgtcaaatagcggcgctttaacatagaatttgatcaaaatgttatttttcgcaatccacaatggacaacattgattaa |
101 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2309529 |
acaatgtgttgtcaaatagcggtgctttaacatagaatttgatcaaaatgttatttttcgcaatccacaatggacaacattgattaa |
2309615 |
T |
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