View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21538_low_2 (Length: 695)

Name: NF21538_low_2
Description: NF21538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21538_low_2
NF21538_low_2
[»] chr2 (16 HSPs)
chr2 (202-685)||(16146280-16146763)
chr2 (205-685)||(16176633-16177113)
chr2 (20-685)||(16154912-16155588)
chr2 (20-200)||(16146819-16147002)
chr2 (73-200)||(7488087-7488213)
chr2 (76-135)||(37981686-37981745)
chr2 (76-200)||(15284493-15284616)
chr2 (76-135)||(2288523-2288582)
chr2 (80-135)||(36598432-36598487)
chr2 (75-200)||(21736565-21736689)
chr2 (73-135)||(35172597-35172659)
chr2 (206-255)||(14914082-14914131)
chr2 (532-581)||(16200350-16200399)
chr2 (205-257)||(14922308-14922360)
chr2 (526-578)||(16271179-16271231)
chr2 (76-200)||(18176430-18176553)
[»] chr1 (11 HSPs)
chr1 (76-202)||(43553534-43553659)
chr1 (77-205)||(19007541-19007668)
chr1 (76-135)||(52179652-52179711)
chr1 (76-144)||(27198326-27198394)
chr1 (79-159)||(39758020-39758100)
chr1 (79-159)||(39763374-39763454)
chr1 (76-135)||(14555272-14555331)
chr1 (76-200)||(42657714-42657836)
chr1 (76-135)||(48194654-48194713)
chr1 (76-135)||(48203412-48203471)
chr1 (76-134)||(4288998-4289056)
[»] chr6 (5 HSPs)
chr6 (76-200)||(5957126-5957249)
chr6 (76-125)||(4653372-4653421)
chr6 (76-135)||(708979-709038)
chr6 (76-135)||(7100228-7100287)
chr6 (76-135)||(8794343-8794402)
[»] chr4 (12 HSPs)
chr4 (76-201)||(16653253-16653377)
chr4 (76-197)||(28847063-28847183)
chr4 (76-159)||(28100543-28100626)
chr4 (76-135)||(37370848-37370907)
chr4 (76-135)||(38230836-38230895)
chr4 (76-200)||(47301313-47301432)
chr4 (76-159)||(53271949-53272032)
chr4 (82-135)||(1848494-1848547)
chr4 (73-135)||(20538995-20539058)
chr4 (85-200)||(56397443-56397557)
chr4 (76-133)||(53594152-53594209)
chr4 (79-135)||(44646785-44646841)
[»] chr7 (8 HSPs)
chr7 (73-205)||(12253349-12253480)
chr7 (80-144)||(9599030-9599094)
chr7 (80-144)||(9826601-9826665)
chr7 (76-135)||(37042524-37042583)
chr7 (73-200)||(33474518-33474644)
chr7 (85-159)||(3634253-3634327)
chr7 (76-134)||(46037311-46037369)
chr7 (79-135)||(46202513-46202569)
[»] chr5 (8 HSPs)
chr5 (76-144)||(26806537-26806605)
chr5 (76-135)||(2276166-2276225)
chr5 (81-135)||(26795599-26795653)
chr5 (81-134)||(26806663-26806716)
chr5 (76-144)||(26795473-26795541)
chr5 (76-159)||(28594403-28594486)
chr5 (73-200)||(3604411-3604537)
chr5 (76-135)||(39753499-39753558)
[»] chr3 (15 HSPs)
chr3 (81-181)||(10216127-10216227)
chr3 (76-144)||(10225630-10225698)
chr3 (77-144)||(10216002-10216069)
chr3 (76-135)||(44042006-44042065)
chr3 (76-135)||(45926906-45926965)
chr3 (81-135)||(10104980-10105034)
chr3 (81-159)||(10225756-10225834)
chr3 (76-144)||(10104854-10104922)
chr3 (76-172)||(46749278-46749374)
chr3 (86-135)||(10055755-10055804)
chr3 (73-201)||(23697004-23697131)
chr3 (73-201)||(23715459-23715586)
chr3 (73-201)||(23733915-23734042)
chr3 (73-201)||(23752373-23752500)
chr3 (76-134)||(44701609-44701667)
[»] chr8 (3 HSPs)
chr8 (76-144)||(14061601-14061669)
chr8 (73-200)||(43488906-43489032)
chr8 (73-135)||(17790500-17790562)
[»] scaffold0287 (1 HSPs)
scaffold0287 (85-159)||(11758-11832)


Alignment Details
Target: chr2 (Bit Score: 460; Significance: 0; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 202 - 685
Target Start/End: Complemental strand, 16146763 - 16146280
Alignment:
Q  202 cttattataactaattattacaaaatattctattcggttggtcaactattctatcaattaattggtgaataaaatcatgaagataatacatttgaaatag 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  16146763 cttattataactaattattacaaaatattctattcggttggtcaactattctatcaattaattgatgaataaaatcatgaagataatacatttgaaatag 16146664  T
Q  302 ctatgaatatcatacatacttattctatttcctttaagatcaaactcaacgatcataggaacaaaggcaaagactcatatcaagggcatcgacacacttc 401  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  16146663 ctatgaatatcatacatacttattgtatttcctttaagatcaaactcaacgatcataggaacaaaggcaaagactcatatcaagggcatcaacacacttc 16146564  T
Q  402 ccaacacccgttttactatatcgactaacacaccttttgttgcaacaatcatcttgacagtcaccagtgcaaattcccatcccaataccacagttaccag 501  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16146563 ccaacacccgttttactatatctactaacacaccttttgttgcaacaatcatcttgacagtcaccagtgcaaattcccatcccaataccacagttaccag 16146464  T
Q  502 gtgatgtcaatccaggtggtggctgatcataagtacaagtgcataagttatagtatgaacatgacgatcctaaaacacgaacgcctcttgcaaaggaatt 601  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  16146463 gtggtgtcaatccaggtggtggctgatcataagtacaagtgcataagttatagaatgaacatgacgatcctaaaacacgaacgcctcttgcaaaggaatt 16146364  T
Q  602 acagtgttcagaacaatcttgtcttgcacagctaccaacaatttttgtgcattcaccttctacctgtattaattgccctatgct 685  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16146363 acagtgttcagaacaatcttgtcttgcacagctaccaacaatttttgtgcattcaccttctacctgtattaattgccctatgct 16146280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 205 - 685
Target Start/End: Complemental strand, 16177113 - 16176633
Alignment:
Q  205 attataactaattattacaaaatattctattcggttggtcaactattctatcaattaattggtgaataaaatcatgaagataatacatttgaaatagcta 304  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  16177113 attataactaattattacaaaatattctatttggttggtcaactattctatcaattaattggtgaataaaatcatgaagagaatgcatttgaaatagcta 16177014  T
Q  305 tgaatatcatacatacttattctatttcctttaagatcaaactcaacgatcataggaacaaaggcaaagactcatatcaagggcatcgacacacttccca 404  Q
    ||||||||||||| | ||||| |||||||| |||||||||| ||||||||||||||||||||| |||||| ||||| ||| |||||||||||| ||||||    
T  16177013 tgaatatcatacaaatttattgtatttcctctaagatcaaattcaacgatcataggaacaaagacaaagaatcataccaaaggcatcgacacaattccca 16176914  T
Q  405 acacccgttttactatatcgactaacacaccttttgttgcaacaatcatcttgacagtcaccagtgcaaattcccatcccaataccacagttaccaggtg 504  Q
      |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||  ||| ||||||||||    
T  16176913 gaacccgttttactatatcgactaacacaccttttgttgcaacattcatcttgacagtcaccattgcaaattcccatcccaataatacaattaccaggtg 16176814  T
Q  505 atgtcaatccaggtggtggctgatcataagtacaagtgcataagttatagtatgaacatgacgatcctaaaacacgaacgcctcttgcaaaggaattaca 604  Q
     ||| ||||| |||||||||| |||| ||||||||||||||||||| |||||||||||||| ||||||||||||  ||| ||| ||||| | || | |||    
T  16176813 gtgttaatcctggtggtggcttatcaaaagtacaagtgcataagttgtagtatgaacatgatgatcctaaaacagcaacaccttttgcatatgattgaca 16176714  T
Q  605 gtgttcagaacaatcttgtcttgcacagctaccaacaatttttgtgcattcaccttctacctgtattaattgccctatgct 685  Q
     ||    | |||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  16176713 atgagttgcacaatcttcttttgcacaactaccaacaatttttgtgcattcaccttctacctgtattaattgccctgtgct 16176633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 20 - 685
Target Start/End: Complemental strand, 16155588 - 16154912
Alignment:
Q  20 cttagaaatctcaatcgaatgtcaacggatttcgttggcttgnnnnnnnngtgttaattgtcttaattgaataccacaaaatttatataaattttataaa 119  Q
    ||||||||||||||| ||||| ||||||||||||||| |||         || |||||||||||||||||||||||||||||||||||||||||||||||    
T  16155588 cttagaaatctcaattgaatgccaacggatttcgttg-ctttgaaaaaaagtcttaattgtcttaattgaataccacaaaatttatataaattttataaa 16155490  T
Q  120 agtcttaattgaatacgaaaagactatcttattataaaaatatccattaaaatttctttaaaatctc---aattcaatacacccac-ttattataactaa 215  Q
    ||| || ||||||||| | | ||||||||||| |||| ||  || ||||||||  |||| | ||||    |||||||||||||| | |||||||||||||    
T  16155489 agttttgattgaataccacacgactatcttatcataataaagtctattaaaatc-ctttgatatcttcttaattcaatacaccctccttattataactaa 16155391  T
Q  216 ttattacaaaatattctattcggttggtcaactattctat----caattaattggtgaataaaatcatgaagataatacatttgaaatagctatgaatat 311  Q
    ||||||||||||||||||||||||||||||| ||||||||    |||||||||| |||||||||||| ||||| |||||||||||||| |||| ||||||    
T  16155390 ttattacaaaatattctattcggttggtcaattattctatatatcaattaattgatgaataaaatcacgaagagaatacatttgaaatcgctaggaatat 16155291  T
Q  312 --catacatacttattctatttcctttaagatcaaactcaacgatcataggaacaaaggcaaagactcatatcaagggcatcgacacacttcccaacacc 409  Q
      |||| || |||||| |||||||||||||||||||||||||||  ||||  ||||| ||||| |  ||||| || |||||  |||||   |||| ||||    
T  16155290 atcatatatgcttattgtatttcctttaagatcaaactcaacgaagatagttacaaatgcaaaaaagcatatgaaaggcattaacacagaccccagcacc 16155191  T
Q  410 cgttttactatatcgactaacacaccttttgttgcaacaatcatcttgacagtcaccagtgcaaattcccatcccaataccacagttacca---ggtgat 506  Q
     ||||||||||||| |||||||||| |||||||||||||||||  | |||||||| ||||||||||||||||||||||| |||| | ||||   ||||||    
T  16155190 tgttttactatatctactaacacactttttgttgcaacaatcacttagacagtcatcagtgcaaattcccatcccaatatcacaatgaccagttggtgat 16155091  T
Q  507 gtcaatccaggtggtggctgatcataagtacaagtgcataagttatagtatgaacatgacgatcctaaaacacgaacgcctcttgcaaaggaattacagt 606  Q
    |  ||| | |||||||||||||||||| |||||||||||||||| ||| |||||||||| ||||||||||||  ||| ||| || || | |  | ||| |    
T  16155090 gataatgctggtggtggctgatcataactacaagtgcataagttgtagaatgaacatgaggatcctaaaacagcaacaccttttccatatgcttgacaat 16154991  T
Q  607 gttcagaacaatcttgtcttgcacagctaccaacaatttttgtgcattcaccttctacctgtattaattgccctatgct 685  Q
    |    | |||||||  | ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  16154990 gagttgcacaatctatttttgcacaactaccaacaattattgtgcattcaccttctacctgtattaattgccctgtgct 16154912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 20 - 200
Target Start/End: Complemental strand, 16147002 - 16146819
Alignment:
Q  20 cttagaaatctcaatcgaatgtcaacggatttcgttggcttgnnnnnnnn---gtgttaattgtcttaattgaataccacaaaatttatataaattttat 116  Q
    ||||||||||||||| ||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||    
T  16147002 cttagaaatctcaattgaatgtcaacggatttcgttggcttgaaaaaaaaaaagtgttaattgtcttaattgaataccacaaaatttatataaattttat 16146903  T
Q  117 aaaagtcttaattgaatacgaaaagactatcttattataaaaatatccattaaaatttctttaaaatctcaattcaatacaccc 200  Q
    ||||||||| ||||||||||||||  |||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  16146902 aaaagtcttgattgaatacgaaaaagctatgttatcataaaaatgtccattaaaatttctttaaaatctcaattcaatacaccc 16146819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 73 - 200
Target Start/End: Original strand, 7488087 - 7488213
Alignment:
Q  73 ttaattgtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatacgaaaagactatcttattataaaaatatccattaaaat 172  Q
    ||||||||||| |||||||||||||| |||||| || |||| ||||||||||| ||| ||||| | |||| | |||| | |||||||  || |||||||     
T  7488087 ttaattgtcttgattgaataccacaagatttatttagatttcataaaagtcttgattcaataccacaagattttcttttcataaaaaagtctattaaaa- 7488185  T
Q  173 ttctttaaaatctcaattcaatacaccc 200  Q
    || ||| |||||||||||||||||||||    
T  7488186 ttatttgaaatctcaattcaatacaccc 7488213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 135
Target Start/End: Complemental strand, 37981745 - 37981686
Alignment:
Q  76 attgtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatac 135  Q
    |||||||||||||||||||||||||||||| || ||||||||||||| || |||||||||    
T  37981745 attgtcttaattgaataccacaaaatttatttatattttataaaagttttgattgaatac 37981686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 76 - 200
Target Start/End: Original strand, 15284493 - 15284616
Alignment:
Q  76 attgtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatacgaaaagactatcttattataaaaatatccattaaaatttc 175  Q
    ||||||||||||||||||||||| |||| | || ||||||||||||||||  |||||||| |  ||||| | |||||||||||| |||  || ||| | |    
T  15284493 attgtcttaattgaataccacaagatttgtttacattttataaaagtcttggttgaataccactagacttttttattataaaaa-atctttttaaaatcc 15284591  T
Q  176 tttaaaatctcaattcaatacaccc 200  Q
     || || ||||||||||||||||||    
T  15284592 cttgaattctcaattcaatacaccc 15284616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 76 - 135
Target Start/End: Complemental strand, 2288582 - 2288523
Alignment:
Q  76 attgtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatac 135  Q
    ||||||||||||||||||||||| |||| | || |||||||||||||||| |||||||||    
T  2288582 attgtcttaattgaataccacaagatttgtttacattttataaaagtcttgattgaatac 2288523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 80 - 135
Target Start/End: Original strand, 36598432 - 36598487
Alignment:
Q  80 tcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatac 135  Q
    |||| |||||||||||||| |||||| ||||||||||||||||||| ||| |||||    
T  36598432 tcttgattgaataccacaatatttatttaaattttataaaagtcttgattaaatac 36598487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 200
Target Start/End: Original strand, 21736565 - 21736689
Alignment:
Q  75 aattgtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatacgaaaagactatcttattataaaaatatccattaaaattt 174  Q
    ||||||||| ||||||||| |||| |||||| || |||| |||||||| || ||| |||||   |||| | |||| | |||||||  || ||||||||      
T  21736565 aattgtcttgattgaatacaacaagatttatttagatttcataaaagtattgattcaatacctcaagattttcttttcataaaaaagtctattaaaatc- 21736663  T
Q  175 ctttaaaatctcaattcaatacaccc 200  Q
    |||| |||||||||||||||||||||    
T  21736664 ctttgaaatctcaattcaatacaccc 21736689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 73 - 135
Target Start/End: Original strand, 35172597 - 35172659
Alignment:
Q  73 ttaattgtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatac 135  Q
    ||||||||||| |||||||||||||| |||||| || |||  ||||||||||| ||| |||||    
T  35172597 ttaattgtcttgattgaataccacaagatttatttagattccataaaagtcttgattcaatac 35172659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 14914131 - 14914082
Alignment:
Q  206 ttataactaattattacaaaatattctattcggttggtcaactattctat 255  Q
    |||| ||||||||||||||||||||||||| | || || |||||||||||    
T  14914131 ttatgactaattattacaaaatattctatttgtttcgttaactattctat 14914082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 532 - 581
Target Start/End: Complemental strand, 16200399 - 16200350
Alignment:
Q  532 aagtacaagtgcataagttatagtatgaacatgacgatcctaaaacacga 581  Q
    ||||||||||||||||||| ||   || ||||||||||||||||||||||    
T  16200399 aagtacaagtgcataagttgtaaattgcacatgacgatcctaaaacacga 16200350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 14922360 - 14922308
Alignment:
Q  205 attataactaattattacaaaatattctattcggttggtcaactattctatca 257  Q
    ||||| |||||||||||| ||||||| |||| | ||||||||||||| |||||    
T  14922360 attatgactaattattaccaaatattttatttgtttggtcaactattatatca 14922308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 526 - 578
Target Start/End: Complemental strand, 16271231 - 16271179
Alignment:
Q  526 gatcataagtacaagtgcataagttatagtatgaacatgacgatcctaaaaca 578  Q
    ||||| ||| ||| ||||||||||| ||| |||||||||| ||||||||||||    
T  16271231 gatcaaaagcacaggtgcataagttgtagaatgaacatgaagatcctaaaaca 16271179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 76 - 200
Target Start/End: Original strand, 18176430 - 18176553
Alignment:
Q  76 attgtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatacgaaaagactatcttattataaaaatatccattaaaatttc 175  Q
    |||||||| ||| |||||||  | |||||| ||  ||||||||||||||| ||||||||| | |||| | | ||||||| |||| |||  |||||| | |    
T  18176430 attgtcttgattcaataccatgagatttatttatgttttataaaagtcttgattgaataccacaagatttttttattattaaaaaatcttttaaaa-tcc 18176528  T
Q  176 tttaaaatctcaattcaatacaccc 200  Q
     || |||||| ||||||||||||||    
T  18176529 cttcaaatcttaattcaatacaccc 18176553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 76 - 202
Target Start/End: Complemental strand, 43553659 - 43553534
Alignment:
Q  76 attgtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatacgaaaagactatcttattataaaaatatccattaaaatttc 175  Q
    |||||| ||||||||||| |||| |||||| |||||||||||||||||||||||| |||| | |||||| | ||||||| ||||| || |||||||| ||    
T  43553659 attgtcgtaattgaatacaacaagatttatttaaattttataaaagtcttaattgtataccacaagacttttttattatgaaaatgtctattaaaatctc 43553560  T
Q  176 tttaaaatctcaattcaatacacccac 202  Q
     || |||||| ||||||||||||||||    
T  43553559 -ttgaaatcttaattcaatacacccac 43553534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 77 - 205
Target Start/End: Original strand, 19007541 - 19007668
Alignment:
Q  77 ttgtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatacgaaaagactatcttattataaaaatatccattaaaatttct 176  Q
    ||||||| |||||||||||||| |||| | || |||||||||||||||| ||||||||| |  ||||| | | ||||||||||  ||  |||||| | |     
T  19007541 ttgtcttgattgaataccacaagatttgtttacattttataaaagtcttgattgaataccactagactttttcattataaaaaagtcttttaaaa-tccc 19007639  T
Q  177 ttaaaatctcaattcaatacacccactta 205  Q
    || ||||||||||||||||||||||||||    
T  19007640 ttgaaatctcaattcaatacacccactta 19007668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 135
Target Start/End: Original strand, 52179652 - 52179711
Alignment:
Q  76 attgtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatac 135  Q
    ||||||||||||||||||||||| |||||| || |||||||||||||||| |||||||||    
T  52179652 attgtcttaattgaataccacaagatttatttatattttataaaagtctttattgaatac 52179711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 76 - 144
Target Start/End: Complemental strand, 27198394 - 27198326
Alignment:
Q  76 attgtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatacgaaaagact 144  Q
    ||||||||||||||||||||||| |||||| || ||||||||||||| || ||||||||| | ||||||    
T  27198394 attgtcttaattgaataccacaagatttatttatattttataaaagttttgattgaataccacaagact 27198326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 79 - 159
Target Start/End: Complemental strand, 39758100 - 39758020
Alignment:
Q  79 gtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatacgaaaagactatcttattataaaaa 159  Q
    |||||||||||||||||||| ||||||||| |||| ||||||||||| ||| ||||||| |||| | | |||| |||||||    
T  39758100 gtcttaattgaataccacaagatttatatagatttaataaaagtcttgattcaatacgacaagatttttttatcataaaaa 39758020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 79 - 159
Target Start/End: Complemental strand, 39763454 - 39763374
Alignment:
Q  79 gtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatacgaaaagactatcttattataaaaa 159  Q
    |||||||||||||||||||| ||||||||| |||| ||||||||||| ||| ||||||| |||| | | |||| |||||||    
T  39763454 gtcttaattgaataccacaagatttatatagatttaataaaagtcttgattcaatacgacaagatttttttatcataaaaa 39763374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 76 - 135
Target Start/End: Original strand, 14555272 - 14555331
Alignment:
Q  76 attgtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatac 135  Q
    |||||||||||||||||||||||| ||| | || |||||||||||||||| |||||||||    
T  14555272 attgtcttaattgaataccacaaattttttttatattttataaaagtcttgattgaatac 14555331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 200
Target Start/End: Complemental strand, 42657836 - 42657714
Alignment:
Q  76 attgtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatacgaaaagactatcttattataaaaatatccattaaaatttc 175  Q
    ||||||||||||||||||||||| | |||| || ||||||| |||||||| ||||||||| | |||||| | |||| || ||||  ||  ||||||| ||    
T  42657836 attgtcttaattgaataccacaaga-ttatttatattttatgaaagtcttgattgaataccacaagacttttttataattaaaaagtcttttaaaatctc 42657738  T
Q  176 tttaaaatctcaattcaatacaccc 200  Q
     || |||||||||| ||||||||||    
T  42657737 -ttgaaatctcaatccaatacaccc 42657714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 76 - 135
Target Start/End: Complemental strand, 48194713 - 48194654
Alignment:
Q  76 attgtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatac 135  Q
    |||||||| |||||||||||||| |||| | || |||||||||||||||| |||||||||    
T  48194713 attgtcttgattgaataccacaagatttgtttagattttataaaagtcttgattgaatac 48194654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 76 - 135
Target Start/End: Complemental strand, 48203471 - 48203412
Alignment:
Q  76 attgtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatac 135  Q
    |||||||| |||||||||||||| |||| | || |||||||||||||||| |||||||||    
T  48203471 attgtcttgattgaataccacaagatttgtttatattttataaaagtcttgattgaatac 48203412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 76 - 134
Target Start/End: Complemental strand, 4289056 - 4288998
Alignment:
Q  76 attgtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaata 134  Q
    |||||||| |||||||||||||  |||||| || ||| |||||||||||| ||||||||    
T  4289056 attgtcttgattgaataccacatgatttatttatattctataaaagtcttgattgaata 4288998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 76 - 200
Target Start/End: Complemental strand, 5957249 - 5957126
Alignment:
Q  76 attgtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatacgaaaagactatcttattataaaaatatccattaaaatttc 175  Q
    ||||||||||||||||||||||| |||| | || |||||||||||||||| ||||||||| |  ||||| | ||||||||||||  ||  |||||| | |    
T  5957249 attgtcttaattgaataccacaagatttgtttacattttataaaagtcttgattgaataccactagacttttttattataaaaaagtcttttaaaa-tcc 5957151  T
Q  176 tttaaaatctcaattcaatacaccc 200  Q
     || || ||||||||||||||||||    
T  5957150 cttgaattctcaattcaatacaccc 5957126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 4653421 - 4653372
Alignment:
Q  76 attgtcttaattgaataccacaaaatttatataaattttataaaagtctt 125  Q
    ||||||||||||||||||||||| |||||| || ||||||||||||||||    
T  4653421 attgtcttaattgaataccacaagatttatttacattttataaaagtctt 4653372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 76 - 135
Target Start/End: Complemental strand, 709038 - 708979
Alignment:
Q  76 attgtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatac 135  Q
    |||||||| |||||||||||||| |||||| || ||||||||||||| || |||||||||    
T  709038 attgtcttgattgaataccacaagatttatttacattttataaaagttttgattgaatac 708979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 76 - 135
Target Start/End: Complemental strand, 7100287 - 7100228
Alignment:
Q  76 attgtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatac 135  Q
    |||||||| |||||||||||||| |||| | || |||||||||||||||| |||||||||    
T  7100287 attgtcttgattgaataccacaagatttgtttagattttataaaagtcttgattgaatac 7100228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 76 - 135
Target Start/End: Original strand, 8794343 - 8794402
Alignment:
Q  76 attgtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatac 135  Q
    |||||||| |||||||||||||| |||| | || |||||||||||||||| |||||||||    
T  8794343 attgtcttgattgaataccacaagatttgtttagattttataaaagtcttgattgaatac 8794402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 201
Target Start/End: Complemental strand, 16653377 - 16653253
Alignment:
Q  76 attgtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatacgaaaagactatcttattataaaaatatccattaaaatttc 175  Q
    |||||||||||||||||| ||||||||||| || ||||||||||| |||| ||||||||| | |||||| | || || | ||||| ||  |||||| |||    
T  16653377 attgtcttaattgaatacaacaaaatttatgtatattttataaaattcttgattgaataccacaagacttttttttttttaaaatgtcttttaaaa-ttc 16653279  T
Q  176 tttaaaatctcaattcaatacaccca 201  Q
      | ||||| ||||||||||||||||    
T  16653278 catgaaatcccaattcaatacaccca 16653253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 197
Target Start/End: Original strand, 28847063 - 28847183
Alignment:
Q  76 attgtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatacgaaaagactatcttattataaaaatatccattaaaatttc 175  Q
    ||||||||||||||||||||||| |||||| |  |||| |||||||| || ||||||||| |  ||||| | ||||||||||||  ||  |||||| | |    
T  28847063 attgtcttaattgaataccacaagatttattttcatttcataaaagttttgattgaataccactagacttttttattataaaaaagtcttttaaaa-tcc 28847161  T
Q  176 tttaaaatctcaattcaataca 197  Q
    |||||||||||||| |||||||    
T  28847162 tttaaaatctcaatccaataca 28847183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 76 - 159
Target Start/End: Original strand, 28100543 - 28100626
Alignment:
Q  76 attgtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatacgaaaagactatcttattataaaaa 159  Q
    |||||||| ||||||||||| || |||||| || |||||||||||||||| ||||||||| | |||||| | |||| |||||||    
T  28100543 attgtcttgattgaataccataagatttatttatattttataaaagtcttgattgaataccacaagacttttttataataaaaa 28100626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 76 - 135
Target Start/End: Original strand, 37370848 - 37370907
Alignment:
Q  76 attgtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatac 135  Q
    ||||||||||||||||||||||| |||||| || ||||||||||||| || |||||||||    
T  37370848 attgtcttaattgaataccacaagatttatttatattttataaaagttttgattgaatac 37370907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 76 - 135
Target Start/End: Complemental strand, 38230895 - 38230836
Alignment:
Q  76 attgtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatac 135  Q
    |||||||| |||||||||||||| |||| | ||||||||||||||||||| |||||||||    
T  38230895 attgtcttgattgaataccacaagatttgtttaaattttataaaagtcttgattgaatac 38230836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 76 - 200
Target Start/End: Complemental strand, 47301432 - 47301313
Alignment:
Q  76 attgtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatacgaaaagactatcttattataaaaatatccattaaaatttc 175  Q
    ||||||||||||||||||||||||||||||    | | ||||||| |||||||||||||| | |||||||| ||||| | ||||  ||   ||||||| |    
T  47301432 attgtcttaattgaataccacaaaatttat----actctataaaaatcttaattgaataccacaagactattttatttttaaaaagtcttataaaattac 47301337  T
Q  176 tttaaaatctcaattcaatacaccc 200  Q
      |||||||||||||||||||||||    
T  47301336 -ataaaatctcaattcaatacaccc 47301313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 76 - 159
Target Start/End: Complemental strand, 53272032 - 53271949
Alignment:
Q  76 attgtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatacgaaaagactatcttattataaaaa 159  Q
    |||||||| |||||||||||||| |||||| || ||| |||||||||||| ||||||||  | |||||| | ||||| ||||||    
T  53272032 attgtcttgattgaataccacaatatttatttatattatataaaagtcttgattgaatatcacaagacttttttattttaaaaa 53271949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 135
Target Start/End: Original strand, 1848494 - 1848547
Alignment:
Q  82 ttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatac 135  Q
    ||||||||||||||||| |||||| || |||||||||||||||| ||| |||||    
T  1848494 ttaattgaataccacaagatttatttatattttataaaagtcttgattaaatac 1848547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 135
Target Start/End: Complemental strand, 20539058 - 20538995
Alignment:
Q  73 ttaattgtcttaattgaataccacaaaatttatataaattttat-aaaagtcttaattgaatac 135  Q
    ||||||||||| |||||||||||||| |||||| || ||||| | ||||||||| |||||||||    
T  20539058 ttaattgtcttgattgaataccacaagatttatttatattttgtaaaaagtcttgattgaatac 20538995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 200
Target Start/End: Complemental strand, 56397557 - 56397443
Alignment:
Q  85 attgaataccacaaaatttatataaattttataaaagtcttaattgaatacgaaaagactatcttattataaaaatatccattaaaatttctttaaaatc 184  Q
    ||||||||||||||||||||| || |||  ||||||||||| | | |||||   |||| | |||| | |||||||  || ||||||| | |||| |||||    
T  56397557 attgaataccacaaaatttatttagattccataaaagtcttgaatcaatacctcaagattttcttttcataaaaaagtctattaaaa-tcctttgaaatc 56397459  T
Q  185 tcaattcaatacaccc 200  Q
    ||||||||||||||||    
T  56397458 tcaattcaatacaccc 56397443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 133
Target Start/End: Complemental strand, 53594209 - 53594152
Alignment:
Q  76 attgtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaat 133  Q
    ||||| ||||||||||||||||| |||||| || ||||||||||| | || |||||||    
T  53594209 attgttttaattgaataccacaagatttatttatattttataaaatttttgattgaat 53594152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 79 - 135
Target Start/End: Complemental strand, 44646841 - 44646785
Alignment:
Q  79 gtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatac 135  Q
    ||||| ||||||||||| || |||||| ||  ||||||||||||||| |||||||||    
T  44646841 gtcttgattgaataccataagatttatttatgttttataaaagtcttgattgaatac 44646785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 73 - 205
Target Start/End: Original strand, 12253349 - 12253480
Alignment:
Q  73 ttaattgtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatacgaaaagactatcttattataaaaatatccattaaaat 172  Q
    ||||||||||| ||||||||||| || |||||| || |||  ||||||||||| ||| |||||  ||||| | |||| | |||||||  || |||||||     
T  12253349 ttaattgtcttgattgaataccataagatttatttagattccataaaagtcttgattcaatacctaaagattttcttttcataaaaaagtctattaaaa- 12253447  T
Q  173 ttctttaaaatctcaattcaatacacccactta 205  Q
    | |||| ||||||||||||||||||||| ||||    
T  12253448 tcctttgaaatctcaattcaatacaccccctta 12253480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 9599030 - 9599094
Alignment:
Q  80 tcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatacgaaaagact 144  Q
    |||||||||||||| |||| |||||| |||||||||||||| |||| ||||||||| | ||||||    
T  9599030 tcttaattgaatacaacaagatttatttaaattttataaaattcttgattgaatactacaagact 9599094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 9826601 - 9826665
Alignment:
Q  80 tcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatacgaaaagact 144  Q
    |||||||||||||| |||| |||||| |||||||||||||| |||| ||||||||| | ||||||    
T  9826601 tcttaattgaatacaacaagatttatttaaattttataaaattcttgattgaatactacaagact 9826665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 76 - 135
Target Start/End: Original strand, 37042524 - 37042583
Alignment:
Q  76 attgtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatac 135  Q
    |||||| |||||||||||||||||||| || || ||||||||||| |||| |||||||||    
T  37042524 attgtcataattgaataccacaaaattaatttagattttataaaaatcttgattgaatac 37042583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 200
Target Start/End: Complemental strand, 33474644 - 33474518
Alignment:
Q  73 ttaattgtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatacgaaaagactatcttattataaaaatatccattaaaat 172  Q
    ||||||||||| |||||||||||||| |||||| || |||  ||||||||||| ||| ||||    |||| | | |  | ||||||| ||| |||||||     
T  33474644 ttaattgtcttgattgaataccacaagatttatttagattccataaaagtcttgattcaataactcaagattttatgttcataaaaaaatctattaaaa- 33474546  T
Q  173 ttctttaaaatctcaattcaatacaccc 200  Q
    | |||| |||||||||||||||||||||    
T  33474545 tcctttgaaatctcaattcaatacaccc 33474518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 3634327 - 3634253
Alignment:
Q  85 attgaataccacaaaatttatataaattttataaaagtcttaattgaatacgaaaagactatcttattataaaaa 159  Q
    ||||||||||| ||||||||  || |||||||||||||||| ||||||||  | |||||| | |||| |||||||    
T  3634327 attgaataccataaaatttacttatattttataaaagtcttgattgaatatcacaagacttttttataataaaaa 3634253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 76 - 134
Target Start/End: Original strand, 46037311 - 46037369
Alignment:
Q  76 attgtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaata 134  Q
    |||||||| |||||||| ||||| |||| | || |||||||||||||||| ||||||||    
T  46037311 attgtcttgattgaatatcacaagatttgtttacattttataaaagtcttgattgaata 46037369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 79 - 135
Target Start/End: Original strand, 46202513 - 46202569
Alignment:
Q  79 gtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatac 135  Q
    ||||| ||||||||||||||||||||| |  ||| ||||||| |||| |||||||||    
T  46202513 gtcttgattgaataccacaaaatttatttttattctataaaaatcttgattgaatac 46202569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 26806537 - 26806605
Alignment:
Q  76 attgtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatacgaaaagact 144  Q
    |||||||||||||||||| |||| |||||| || |||||||||||||||| ||||||||| | ||||||    
T  26806537 attgtcttaattgaatactacaagatttatttatattttataaaagtcttgattgaataccacaagact 26806605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 76 - 135
Target Start/End: Original strand, 2276166 - 2276225
Alignment:
Q  76 attgtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatac 135  Q
    ||||| ||||||||||||||||| |||||| || |||||||||||||||| |||||||||    
T  2276166 attgttttaattgaataccacaagatttatttacattttataaaagtcttgattgaatac 2276225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 135
Target Start/End: Original strand, 26795599 - 26795653
Alignment:
Q  81 cttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatac 135  Q
    |||||||||||||||||| |||||| || |||||||||||||||| |||||||||    
T  26795599 cttaattgaataccacaagatttatttatattttataaaagtcttgattgaatac 26795653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 26806663 - 26806716
Alignment:
Q  81 cttaattgaataccacaaaatttatataaattttataaaagtcttaattgaata 134  Q
    |||||||||||||||||| |||||| || |||||||||||||||| ||||||||    
T  26806663 cttaattgaataccacaagatttatttatattttataaaagtcttgattgaata 26806716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 26795473 - 26795541
Alignment:
Q  76 attgtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatacgaaaagact 144  Q
    |||||||||||||||||| |||| |||||| || ||||||||||||| || ||||||||| | ||||||    
T  26795473 attgtcttaattgaatactacaagatttatttatattttataaaagttttgattgaataccacaagact 26795541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 76 - 159
Target Start/End: Original strand, 28594403 - 28594486
Alignment:
Q  76 attgtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatacgaaaagactatcttattataaaaa 159  Q
    |||||||||||| |||||||||| |||||| ||  |||||||||| |||| ||||||||| | |||||| | |||| |||||||    
T  28594403 attgtcttaattaaataccacaagatttatttatgttttataaaaatcttgattgaataccacaagacttttttataataaaaa 28594486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 200
Target Start/End: Original strand, 3604411 - 3604537
Alignment:
Q  73 ttaattgtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatacgaaaagactatcttattataaaaatatccattaaaat 172  Q
    ||||||||||| |||||||||||||| |||||| || |||| |||||||| || ||| |||||   |||| | |||| | |||| ||  || |||||||     
T  3604411 ttaattgtcttgattgaataccacaagatttatttagatttcataaaagttttgattcaatacctcaagattttcttttcataagaaagtctattaaaa- 3604509  T
Q  173 ttctttaaaatctcaattcaatacaccc 200  Q
    |  ||| |||||||||||||||||||||    
T  3604510 tcatttgaaatctcaattcaatacaccc 3604537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 135
Target Start/End: Complemental strand, 39753558 - 39753499
Alignment:
Q  76 attgtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatac 135  Q
    |||||||| |||||||| ||||| |||| | || |||||||||||||||| |||||||||    
T  39753558 attgtcttgattgaatatcacaagatttttttatattttataaaagtcttgattgaatac 39753499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 81 - 181
Target Start/End: Original strand, 10216127 - 10216227
Alignment:
Q  81 cttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatacgaaaagactatcttattataaaaatatccattaaaatttctttaa 180  Q
    ||||||||||||| |||| |||||| || |||||||||||||||| ||||||||| | |||||| | |||| ||||||| |||  |||||||  ||||||    
T  10216127 cttaattgaatacgacaagatttatttatattttataaaagtcttgattgaataccacaagacttttttataataaaaaaatcttttaaaatccctttaa 10216226  T
Q  181 a 181  Q
    |    
T  10216227 a 10216227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 10225630 - 10225698
Alignment:
Q  76 attgtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatacgaaaagact 144  Q
    |||||||||||||||||| |||| |||||| || |||||||||||||||| ||||||||| | ||||||    
T  10225630 attgtcttaattgaatactacaagatttatttatattttataaaagtcttgattgaataccacaagact 10225698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 144
Target Start/End: Original strand, 10216002 - 10216069
Alignment:
Q  77 ttgtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatacgaaaagact 144  Q
    |||||||||||||||||||||| |||||| || ||||||||||||| || ||||||||| | ||||||    
T  10216002 ttgtcttaattgaataccacaagatttatttatattttataaaagttttgattgaataccacaagact 10216069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 76 - 135
Target Start/End: Original strand, 44042006 - 44042065
Alignment:
Q  76 attgtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatac 135  Q
    ||||||||||||||||||||||| |||||| || ||| |||||||||||| |||||||||    
T  44042006 attgtcttaattgaataccacaagatttatttatattctataaaagtcttgattgaatac 44042065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 76 - 135
Target Start/End: Original strand, 45926906 - 45926965
Alignment:
Q  76 attgtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatac 135  Q
    ||||||||||||||||||||||| |||||| || |||||||| ||||||| |||||||||    
T  45926906 attgtcttaattgaataccacaagatttatttatattttatagaagtcttgattgaatac 45926965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 135
Target Start/End: Original strand, 10104980 - 10105034
Alignment:
Q  81 cttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatac 135  Q
    |||||||||||||||||| |||||| || |||||||||||||||| |||||||||    
T  10104980 cttaattgaataccacaagatttatttatattttataaaagtcttgattgaatac 10105034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 159
Target Start/End: Original strand, 10225756 - 10225834
Alignment:
Q  81 cttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatacgaaaagactatcttattataaaaa 159  Q
    |||||||||||||||||| |||||| || |||||||||||||||| ||||||||  | |||||| | |||| |||||||    
T  10225756 cttaattgaataccacaagatttatttatattttataaaagtcttgattgaatagcacaagacttttttataataaaaa 10225834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 10104854 - 10104922
Alignment:
Q  76 attgtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatacgaaaagact 144  Q
    |||||||||||||||||| |||| |||||| || ||||||||||||| || ||||||||| | ||||||    
T  10104854 attgtcttaattgaatactacaagatttatttatattttataaaagttttgattgaataccacaagact 10104922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 172
Target Start/End: Complemental strand, 46749374 - 46749278
Alignment:
Q  76 attgtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatacgaaaagactatcttattataaaaatatccattaaaat 172  Q
    |||||||||||||||||||| || |||||| || |||||||||||||||| ||| | ||| | |||||| | |||| ||||||| |||  |||||||    
T  46749374 attgtcttaattgaataccataagatttatttatattttataaaagtcttgattcattaccacaagacttttttataataaaaaaatcttttaaaat 46749278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 135
Target Start/End: Original strand, 10055755 - 10055804
Alignment:
Q  86 ttgaataccacaaaatttatataaattttataaaagtcttaattgaatac 135  Q
    ||||||||||||| |||||| || |||||||||||||||| |||||||||    
T  10055755 ttgaataccacaagatttatttatattttataaaagtcttgattgaatac 10055804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 73 - 201
Target Start/End: Complemental strand, 23697131 - 23697004
Alignment:
Q  73 ttaattgtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatacgaaaagactatcttattataaaaatatccattaaaat 172  Q
    ||||||||||| |||||||||||||  |||||| || |||  ||||||||||| ||| ||||    |||| | |||| | |||||||  || |||||||     
T  23697131 ttaattgtcttgattgaataccacatgatttatttagattcaataaaagtcttgattcaataactcaagattttcttttcataaaaaagtctattaaaa- 23697033  T
Q  173 ttctttaaaatctcaattcaatacaccca 201  Q
    |||||| |||| |||||||||||||||||    
T  23697032 ttctttgaaatttcaattcaatacaccca 23697004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 73 - 201
Target Start/End: Complemental strand, 23715586 - 23715459
Alignment:
Q  73 ttaattgtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatacgaaaagactatcttattataaaaatatccattaaaat 172  Q
    ||||||||||| |||||||||||||  |||||| || |||  ||||||||||| ||| ||||    |||| | |||| | |||||||  || |||||||     
T  23715586 ttaattgtcttgattgaataccacatgatttatttagattcaataaaagtcttgattcaataactcaagattttcttttcataaaaaagtctattaaaa- 23715488  T
Q  173 ttctttaaaatctcaattcaatacaccca 201  Q
    |||||| |||| |||||||||||||||||    
T  23715487 ttctttgaaatttcaattcaatacaccca 23715459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 73 - 201
Target Start/End: Complemental strand, 23734042 - 23733915
Alignment:
Q  73 ttaattgtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatacgaaaagactatcttattataaaaatatccattaaaat 172  Q
    ||||||||||| |||||||||||||  |||||| || |||  ||||||||||| ||| ||||    |||| | |||| | |||||||  || |||||||     
T  23734042 ttaattgtcttgattgaataccacatgatttatttagattcaataaaagtcttgattcaataactcaagattttcttttcataaaaaagtctattaaaa- 23733944  T
Q  173 ttctttaaaatctcaattcaatacaccca 201  Q
    |||||| |||| |||||||||||||||||    
T  23733943 ttctttgaaatttcaattcaatacaccca 23733915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 73 - 201
Target Start/End: Complemental strand, 23752500 - 23752373
Alignment:
Q  73 ttaattgtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatacgaaaagactatcttattataaaaatatccattaaaat 172  Q
    ||||||||||| |||||||||||||  |||||| ||||||  ||||||||||| ||| ||||    |||| | |||| | |||||||  || |||||||     
T  23752500 ttaattgtcttgattgaataccacatgatttatttaaattcaataaaagtcttgattcaataactcaagattttcttttcataaaaaagtctattaaaa- 23752402  T
Q  173 ttctttaaaatctcaattcaatacaccca 201  Q
    |  ||| ||||||||||||||||||||||    
T  23752401 taatttgaaatctcaattcaatacaccca 23752373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 76 - 134
Target Start/End: Complemental strand, 44701667 - 44701609
Alignment:
Q  76 attgtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaata 134  Q
    ||||| || |||||||||||||| |||| | || |||||||||||||||| ||||||||    
T  44701667 attgttttgattgaataccacaagatttgtttacattttataaaagtcttgattgaata 44701609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 76 - 144
Target Start/End: Complemental strand, 14061669 - 14061601
Alignment:
Q  76 attgtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatacgaaaagact 144  Q
    |||||||| |||||||||||||| |||||| || ||| ||||||| |||| ||||||||| | ||||||    
T  14061669 attgtcttgattgaataccacaagatttatttatattctataaaaatcttgattgaataccacaagact 14061601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 200
Target Start/End: Complemental strand, 43489032 - 43488906
Alignment:
Q  73 ttaattgtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatacgaaaagactatcttattataaaaatatccattaaaat 172  Q
    ||||||||||| ||||||||| |||| |||||| || |||  ||||||||||| ||| |||||   |||| | |||| | |||||||  || |||||||     
T  43489032 ttaattgtcttgattgaatactacaagatttatttagattccataaaagtcttgattcaatacctcaagattttcttttcataaaaaagtctattaaaa- 43488934  T
Q  173 ttctttaaaatctcaattcaatacaccc 200  Q
    | |||| |||| ||||||||||||||||    
T  43488933 tcctttgaaatttcaattcaatacaccc 43488906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 73 - 135
Target Start/End: Complemental strand, 17790562 - 17790500
Alignment:
Q  73 ttaattgtcttaattgaataccacaaaatttatataaattttataaaagtcttaattgaatac 135  Q
    |||||| ||||||||||||||||||| ||||   || |||||||||||||| | |||||||||    
T  17790562 ttaattatcttaattgaataccacaagattttgttatattttataaaagtcatgattgaatac 17790500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 11758 - 11832
Alignment:
Q  85 attgaataccacaaaatttatataaattttataaaagtcttaattgaatacgaaaagactatcttattataaaaa 159  Q
    ||||||||||| ||||||||  || |||||||||||||||| ||||||||  | |||||| | |||| |||||||    
T  11758 attgaataccataaaatttacttatattttataaaagtcttgattgaatatcacaagacttttttataataaaaa 11832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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