View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21538_low_25 (Length: 250)
Name: NF21538_low_25
Description: NF21538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21538_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 32098481 - 32098247
Alignment:
| Q |
1 |
tttgaaaaaatgaaataatttaatatgatcacatgtatcattgacatatatcggacaccagccatgcttttaatctaaagtgtcggtgctacatacatag |
100 |
Q |
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| T |
32098481 |
tttgaaaaaatgaaataatttaatatgatcacatgtatcattgacatatatcggacaccagccatgcttttaatctaaagtgtcggtgctacata----g |
32098386 |
T |
|
| Q |
101 |
ctcttggtcacattttatcagttgttcatgaataattgaaagtagctttgatttgcttgttgatttgattctaacaccacttggcacatttactttacat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32098385 |
ctcttggtcacattttatcagttgttcatgaataattgaaagtagctttgatttgcttgttgatttgattctaacaccacttggcacatttactttacat |
32098286 |
T |
|
| Q |
201 |
ttttgtaattaatgtctttcatatataaaatgtattcat |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
32098285 |
ttttgtaattaatgtctttcatatataaaatgtattcat |
32098247 |
T |
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