View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21538_low_6 (Length: 592)
Name: NF21538_low_6
Description: NF21538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21538_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 542; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 20 - 581
Target Start/End: Complemental strand, 4141916 - 4141355
Alignment:
| Q |
20 |
agatgtagtgctatgtcacttgagcataggattatttcccatgaaaggttacatgttacttcttggattattaattaattgtcgaatggttttgcatctt |
119 |
Q |
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| T |
4141916 |
agatgtagtgctatgtcacttgagcataggattatttcccatgaaaggttacatgttatttcttggattattaattaattgtcgaatggttttgcatctt |
4141817 |
T |
|
| Q |
120 |
cagaaattgctgtcattttcatttatattatttctttgttacaggtttttgttctctcgtcatacattacatttgatatatttcacaattatgcattgca |
219 |
Q |
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| T |
4141816 |
cagaaattgctgtcattttcatttatattatttctttgttacaggtttttgttctctcgtcatacgttacatttgatatatttcacaattatgcattgca |
4141717 |
T |
|
| Q |
220 |
ttatatggttctttgtttggttttctatgattctaattatgattttgatgtttttcaaatgcactgtaatatttattttttgcaatgtatgctcaaggat |
319 |
Q |
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| T |
4141716 |
ttatatggttctttgtttggttttctatgattctaattatgattttgatgtttttcaaatgcactgtaatatttattttttgcaatgtatgctcaaggat |
4141617 |
T |
|
| Q |
320 |
gcacaaattttatataatgtttgctacaaatcttgcatgtacagtatgaattgagataccgcgatggtcgcaatgggtatataaagaacgacaaagttat |
419 |
Q |
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| T |
4141616 |
gcacaaatcttatataatgtttgctacaaatcttgcatgtacagtatgaattgagataccgcgatggtcacaatgggtatataaagaacgacaaagttat |
4141517 |
T |
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| Q |
420 |
aggagtgtagagcaaaatgaattacttatattgaactggttttctaccaacaaaggtagtatagtgtctctagagttaactagtgcagatgaataacaag |
519 |
Q |
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| T |
4141516 |
aggagtgtagagcaaaatgaattacttatattgaactggttttctatcaacaaaggtagtatagtgtctctagagttaactagtgcagatgaataacaag |
4141417 |
T |
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| Q |
520 |
ctcattgcatttcaaagaaatactacattttgaataacaatctcattcgcaacgatattctt |
581 |
Q |
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| T |
4141416 |
ctcattgcatttcaaagaaatactacattttgaataacaatctcattcgcaacgatattctt |
4141355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 68 - 214
Target Start/End: Original strand, 3754937 - 3755085
Alignment:
| Q |
68 |
ttacatgttacttcttggattattaattaattgtcgaatggtt----ttgcatcttcagaaattgctgtcattttcatttatattatttctttgtta-ca |
162 |
Q |
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| T |
3754937 |
ttacatgttatttcatggattattaattaatggacgaatgaatgatattgcagcttcagaaacttctgtcattttcatttatattatttgtttgttattt |
3755036 |
T |
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| Q |
163 |
ggtttttgttctctcgtcatacattacatttgatatatttcacaattatgca |
214 |
Q |
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| T |
3755037 |
ggttttttttctc---tcatacattacatttgatatagttcacaattttgca |
3755085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 4157726 - 4157675
Alignment:
| Q |
20 |
agatgtagtgctatgtcacttgagcataggattatttcccatgaaaggttacatg |
74 |
Q |
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| T |
4157726 |
agatgtagtgct--gtcacttgagcataggattatttccca-gaaaggttacatg |
4157675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 333
Target Start/End: Original strand, 3755079 - 3755115
Alignment:
| Q |
297 |
ttttgcaatgtatgctcaaggatgcacaaattttata |
333 |
Q |
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| T |
3755079 |
ttttgcaatgtatgctcaaggatgcagaaattttata |
3755115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 356
Target Start/End: Complemental strand, 2677807 - 2677757
Alignment:
| Q |
304 |
atgtatgctcaaggatgcacaaattttatataatgtttgctacaaatcttgca |
356 |
Q |
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| T |
2677807 |
atgtatgcttaaggatgcacaaattt--tataatgtttacttcaaatcttgca |
2677757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 429 - 465
Target Start/End: Original strand, 3755121 - 3755157
Alignment:
| Q |
429 |
gagcaaaatgaattacttatattgaactggttttcta |
465 |
Q |
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| T |
3755121 |
gagccaaatgaattacttatactgaactggttttcta |
3755157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 105 - 332
Target Start/End: Original strand, 11082196 - 11082412
Alignment:
| Q |
105 |
atggttttgcatcttcagaaattgctgtcattttcatttatattatttctttgttacaggtttttgttctctcgtcatacattacatttgatatatttca |
204 |
Q |
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| T |
11082196 |
atggttttgtagcttcagaaatttctgtcattttcatttatattatttgtttgtcagaggtttttgttctctcatcatacattacatttgatatagttca |
11082295 |
T |
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| Q |
205 |
caattatgcattgcattatatggttctttgtttggttttctatgattctaattatgattttgatgtttttcaaatgcactgtaatatttattttttgcaa |
304 |
Q |
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| T |
11082296 |
caattatgcattacgttatatgatacttcgttt-aatttctatgattctaa----------gatatttttcaaaggcattgtaattttcattttttgcat |
11082384 |
T |
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| Q |
305 |
tgtatgctcaaggatgcacaaattttat |
332 |
Q |
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| T |
11082385 |
tgtatgctcaaggttacacaaatattat |
11082412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 1427351 - 1427278
Alignment:
| Q |
109 |
ttttgcatcttcagaaattgctgtcattttcatttatattatttctttgttacaggtttttgttctctcgtcat |
182 |
Q |
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| T |
1427351 |
ttttgcaacttgagaaattgccattattttcatttatattatatgtttgttagaagtttttgttctctcctcat |
1427278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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