View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21538_low_8 (Length: 524)
Name: NF21538_low_8
Description: NF21538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21538_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 24 - 516
Target Start/End: Original strand, 37220334 - 37220827
Alignment:
| Q |
24 |
accatttgggtccgatcttggcatgaagttcaacgattttctgttcttcttctctagtaattgaacccttttttaaatcaggatgtagatgattaagcca |
123 |
Q |
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| T |
37220334 |
accatttgggtccgatcttggcatgaagttcaacgattttctgttcttcttctctagtaattgaacccttttttaaatcaggatgtagatgattaagcca |
37220433 |
T |
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| Q |
124 |
tcttaaacgacaacttttaccacatcgaaaaagttcggttttcttttttacatcatcccaattgccctctccatattttctcacgtattcttttaatatt |
223 |
Q |
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| T |
37220434 |
tcttaaacgacaacttttaccacatcgaaaaagttcggttttcttttttacatcatcccaattgccctctccatattttctcacgtattcttttaatatt |
37220533 |
T |
|
| Q |
224 |
gcatcctcttgcaatgaccatgctcctttcttcaactttatagtatcactgccattagaatttgacatgattacttacggaaggatgagaggatggaaat |
323 |
Q |
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| T |
37220534 |
gcatcctcgtgcaatgaccatgctcctttcttcaactttatagtatcactgccattagaatttgacatgattacttacggaaggatgagaggatggaaat |
37220633 |
T |
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| Q |
324 |
tgttctatttataataggatttataaagtagttagaggtaaatacggagagtttttgttacttcactt-nnnnnnnntattgttgttacaatatactact |
422 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
37220634 |
tgttgtatttataataggatttataaagtagttagaggtaaatacggagagtttttgtaacttcacttaaaaaaatatattgttgttacaatatactact |
37220733 |
T |
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| Q |
423 |
agctgaatatcaaagatctaaaagataaagttgcaaccagctgaatatatcaaagatttaaaagataaagttcaatttgttcgcctttcatctc |
516 |
Q |
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| T |
37220734 |
agctgaatatcaaagatctaaaagataaagttgaaaccagctgaatatatcaaagatttaaaagataaagttcaatttgttcgcctttcatctc |
37220827 |
T |
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