View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21539_high_1 (Length: 978)
Name: NF21539_high_1
Description: NF21539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21539_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 897; Significance: 0; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 897; E-Value: 0
Query Start/End: Original strand, 1 - 973
Target Start/End: Original strand, 41522813 - 41523785
Alignment:
| Q |
1 |
gtgattttcagattagagcttaaacaattaagtccccttttcgctaatgcccttgctggttttgctacttcaccaagtgagagcatcttggttgaaaatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41522813 |
gtgattttcagattagagcttaaacaattaagtccccttttcgctaatgcccttgctggttttgctacttcaccaagtgagagcatcttggttgaaaatc |
41522912 |
T |
|
| Q |
101 |
attttaggaaacatggagtgtaaaataataataataacattctaggtaagaagcaagactcaaagtaagcttcaaagtataaacaataaatggtttcaga |
200 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41522913 |
gtattaggaaacgtggagtgtaaaataataataataacattctaggtaagaagcaagactcaaagtaagcttcaaagtataaacaataaatggtttcaga |
41523012 |
T |
|
| Q |
201 |
aggatgaaaaaacaacataaatagaaaagagcaagtatataatatatacttaacactttccaagagataagttcctaaagaggtcaaaagaatgatcatt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
41523013 |
aggatgaaaaaacaacataaatagaaaagagcaagtatataatatatacttaacactttccaagagataagttcctaaagaggtcgaaagaatgatcatt |
41523112 |
T |
|
| Q |
301 |
cacgccatctctttctaggtacgaagtaacctcccctacattaccactctcattcactactcgttcacgacactactgaataactacctaccactagacc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
41523113 |
cacgccatctctttctaggtacgaagtaacctcccctacattaccactctcattcactactcgttcacgacactactgaataactagctcccactagacc |
41523212 |
T |
|
| Q |
401 |
ctggcatctcaaccactttcttgagccttctagccttgaccaacaatcatgacacagttggtctacaatcagttctctaggaacatctctcctattctag |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41523213 |
ctggcatctcaaccactttcttgagccttctagccttgaccaacaatcatgacacaattggtctacaatcagttctctaggaacatctctcctattctag |
41523312 |
T |
|
| Q |
501 |
taaagttactaatgtttttgggctcctgaagcacagccctgtctcaaggctgaaatttgtgcttcgcctcattaatttatcttccaaagtagctttctca |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41523313 |
taaagttactaatgtttttgggctcctgaagcgcagccctgtctcaaggctgaaattagtgcttcgcctcattaatttatcttccaaagtagctttctca |
41523412 |
T |
|
| Q |
601 |
gcatgtttgttctgcaactgagtcaatacatgtcttgtccattgcatatggcgaagaaaaacctccctagaaccaaaatttatttgaggttttacagttc |
700 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41523413 |
gcatgtttgttctgcaactgagtcaatacatgtcttgtcaattgcatatggtgaagaaaaacctccctagaaccaaaatttatttgaggttttacagttc |
41523512 |
T |
|
| Q |
701 |
atgtcaacgctacttccatttccataggaaaatcagtttcaggtaaaatgaaaaagtcaatagcttgcttgggttgagtaacatagaataaagatgtgtt |
800 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
41523513 |
atgtcaacactacttccatttccataggaaaatcagtttcagctaaaatgaaaaagtcaatagcttgcttggattgagtaacatagaataaagatgtgtt |
41523612 |
T |
|
| Q |
801 |
tcaatagtcaatttataaaacaagaaaatcatttaccagtccaatctacctagcaatctgatctaacatatatccgatcacacataaatttaatatttat |
900 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||| ||||||||| |
|
|
| T |
41523613 |
tcaatagtcaatttataaaacaagaaaatcatttaccagtccaatctaccaagcaatctgatctaacatttatctgatcacacataaattcaatatttat |
41523712 |
T |
|
| Q |
901 |
caagtaacattaaaaaatgcatatctttataggaataagatatgcatgcataatttccatatacctgatgatg |
973 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
41523713 |
caagtaacattaaaaaatgcatatctttataggaataaaatatgcatgcataatttccatatacctgatgatg |
41523785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 1 - 542
Target Start/End: Original strand, 41513849 - 41514390
Alignment:
| Q |
1 |
gtgattttcagattagagcttaaacaattaagtccccttttcgctaatgcccttgctggttttgctacttcaccaagtgagagcatcttggttgaaaatc |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41513849 |
gtgattttcagattagaacttaaacaattaagtccccttttcgctaatgcccttgctggttttgctacttcaccaagtgagagcatcttggttgaaaatc |
41513948 |
T |
|
| Q |
101 |
attttaggaaacatggagtgtaaaataataataataacattctaggtaagaagcaagactcaaagtaagcttcaaagtataaacaataaatggtttcaga |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
41513949 |
gttttaggaaacgtggagtgtaaaataataataataacattctaggtaagaagcaagactcaaagtaagcttcaaagtataaataataaatggtttcaga |
41514048 |
T |
|
| Q |
201 |
aggatgaaaaaacaacataaatagaaaagagcaagtatataatatatacttaacactttccaagagataagttcctaaagaggtcaaaagaatgatcatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41514049 |
aggatgaaaaaacaacataaatagaaaagagcaagtatataatatatactcaacactttccaagagataagttcctaaagaggtcaaaagaatgatcatt |
41514148 |
T |
|
| Q |
301 |
cacgccatctctttctaggtacgaagtaacctcccctacattaccactctcattcactactcgttcacgacactactgaataactacctaccactagacc |
400 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
41514149 |
cacaccatctctttctaggtacgaagtaacctcccctacattaccactctcattcactactcgttcacgacactactgaataactagctcccactagacc |
41514248 |
T |
|
| Q |
401 |
ctggcatctcaaccactttcttgagccttctagccttgaccaacaatcatgacacagttggtctacaatcagttctctaggaacatctctcctattctag |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
41514249 |
ctggcatctcaaccactttcttgagccttctagccttgaccaacaatcatgacacaattggtctagaatcagttctctaggaacatctctcctattctag |
41514348 |
T |
|
| Q |
501 |
taaagttactaatgtttttgggctcctgaagcacagccctgt |
542 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41514349 |
taaagttactaatgtttttgggctcctgaagcacagccctgt |
41514390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 796 - 973
Target Start/End: Original strand, 41514656 - 41514834
Alignment:
| Q |
796 |
gtgtttcaatagtcaatttataaaa-caagaaaatcatttaccagtccaatctacctagcaatctgatctaacatatatccgatcacacataaatttaat |
894 |
Q |
| |
|
||||||||||||||||| ||||||| ||| |||||||| |||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| |
|
|
| T |
41514656 |
gtgtttcaatagtcaatctataaaaacaataaaatcatgtaccaggccaatctacctagcaatctgatcaaacatttatccgatcacacataaattcaat |
41514755 |
T |
|
| Q |
895 |
atttatcaagtaacattaaaaaatgcatatctttataggaataagatatgcatgcataatttccatatacctgatgatg |
973 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||| |
|
|
| T |
41514756 |
atttatcaagtaacattaaaaaatgcatatctttataggaataagagatgcattcatagtttccatatacctgatgatg |
41514834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 33080586 - 33080749
Alignment:
| Q |
1 |
gtgattttcagattagagcttaaacaattaagtccccttttcgctaatgcccttgctggttttgctacttcaccaagtgagagcatcttggttgaaaatc |
100 |
Q |
| |
|
|||||||||| || |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33080586 |
gtgattttcacatcagagctacaacaattaggtccccttttcgctaatgcccttgctggttttgctacttcaccaagtgagagcatcttggttgaaaatc |
33080685 |
T |
|
| Q |
101 |
attttaggaaacatggagtgtaaaataataataataacattctaggtaagaagcaagactcaaagta |
167 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
33080686 |
attttaggaaacatggagtgtaaaataataataat---attctaggtaagaagcaagattcaaagta |
33080749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 684 - 796
Target Start/End: Original strand, 41514390 - 41514502
Alignment:
| Q |
684 |
ttgaggttttacagttcatgtcaacgctacttccatttccataggaaaatcagtttcaggtaaaatgaaaaagtcaatagcttgcttgggttgagtaaca |
783 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
41514390 |
ttgaggttttacagttcatgtcaacgctacttccatttccataggaaaatcagtttcagctaaaatgaaagagtcaatagcttgcttgggttgagtaaca |
41514489 |
T |
|
| Q |
784 |
tagaataaagatg |
796 |
Q |
| |
|
| |||||||||| |
|
|
| T |
41514490 |
tgtaataaagatg |
41514502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 267 - 431
Target Start/End: Original strand, 41507873 - 41508041
Alignment:
| Q |
267 |
ataagttcctaaagaggtcaaaagaatgatcattcacgccatctctttctaggtacgaagtaacctcccctacattaccactctcattcactactcgttc |
366 |
Q |
| |
|
||||| ||||||||||| ||||| || ||||| ||| ||||| |||||| | | |||||||||||||| ||| |||||||||||||| ||||| ||| |
|
|
| T |
41507873 |
ataagctcctaaagaggaaaaaaggataatcatccacaacatctgtttctaaattctaagtaacctcccctgcatcaccactctcattcagtactctttc |
41507972 |
T |
|
| Q |
367 |
acgacactactgaataactacctaccac----tagaccctggcatctcaaccactttcttgagccttct |
431 |
Q |
| |
|
||| ||||| |||||||| || |||| ||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
41507973 |
tcgatgctactaaataactaactcccacccattagaccctgccataacaaccactttcttgagccttct |
41508041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 41518487 - 41518594
Alignment:
| Q |
1 |
gtgattttcagattagagcttaaacaattaagtccccttttcgctaatgcccttgctggttttgctacttcaccaagtgagagcatcttggttgaaaatc |
100 |
Q |
| |
|
|||||||||| ||||||||| |||| ||||| ||||||| | |||| ||||| |||||||||| |||||||||||||||| ||| | |||||||| |
|
|
| T |
41518487 |
gtgattttcacattagagct---acaactaagttccctttttacaaatggccttgttggttttgcttcttcaccaagtgagagaatccacgatgaaaatc |
41518583 |
T |
|
| Q |
101 |
attttaggaaa |
111 |
Q |
| |
|
|||| |||||| |
|
|
| T |
41518584 |
atttaaggaaa |
41518594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 41508387 - 41508450
Alignment:
| Q |
24 |
acaattaagtccccttttcgctaatgcccttgctggttttgctacttcaccaagtgagagcatc |
87 |
Q |
| |
|
|||| ||||||||| ||| |||||| ||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
41508387 |
acaactaagtccccattttgctaatagccttgttggttttgcttcttcaccaagtgagagcatc |
41508450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 324 - 423
Target Start/End: Original strand, 41517523 - 41517626
Alignment:
| Q |
324 |
aagtaacctcccctacattaccactctcattcactactcgttcacgacactactgaataacta----cctaccactagaccctggcatctcaaccacttt |
419 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||| |||| ||| |||| || || |||||||| ||| ||||||||||||| ||| |||||||||| |
|
|
| T |
41517523 |
aagtaacctcccctgcataaccactctcattcagtactatttctcgacgctgctaaataactaactccctcccactagaccctgccataacaaccacttt |
41517622 |
T |
|
| Q |
420 |
cttg |
423 |
Q |
| |
|
|||| |
|
|
| T |
41517623 |
cttg |
41517626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 33080741 - 33080801
Alignment:
| Q |
171 |
ttcaaagtataaacaataaatggtttcagaaggatga-aaaaacaacataaatagaaaagagc |
232 |
Q |
| |
|
|||||||||||||| |||||||||||||||| | || |||||||||| |||||||||||||| |
|
|
| T |
33080741 |
ttcaaagtataaactataaatggtttcagaa--aagagaaaaacaacaaaaatagaaaagagc |
33080801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 202
Target Start/End: Original strand, 41468444 - 41468479
Alignment:
| Q |
167 |
aagcttcaaagtataaacaataaatggtttcagaag |
202 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |
|
|
| T |
41468444 |
aagcttcaaagtacaaacaataaatggtttcagaag |
41468479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 373 - 431
Target Start/End: Complemental strand, 2438703 - 2438645
Alignment:
| Q |
373 |
ctactgaataactacctaccactagaccctggcatctcaaccactttcttgagccttct |
431 |
Q |
| |
|
|||||||||||||| || | || |||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
2438703 |
ctactgaataactaactcctacaagaccctgccatctcaaccactttattgagccttct |
2438645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University