View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21539_high_12 (Length: 277)
Name: NF21539_high_12
Description: NF21539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21539_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 15 - 258
Target Start/End: Complemental strand, 1077898 - 1077655
Alignment:
| Q |
15 |
gatagtggtagggaaaggacaaaataaataacaggtctaatcaaatcagtgggaatatattttgtggaggatgaaataaatgcatgataaaagcaacatg |
114 |
Q |
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| T |
1077898 |
gatagtggtagggaaaggacaaaataaataacaggtctaatcaaatcagtgggaatatattttgtggaggatgaaataaatgcatgataaaagcaacatg |
1077799 |
T |
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| Q |
115 |
gttaaattgaaagaagtaggattaaagcacacaaatgggcatgcatggccaattaattagaaccccatttgccttgtgaagttttcaaagatatgagtaa |
214 |
Q |
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| T |
1077798 |
gttgaattgaaagaagtaggattaaagcacacaaatgggcatgcatggccaattaattagaaccccatttgccttgtgaagttttcaaagatatgagtaa |
1077699 |
T |
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| Q |
215 |
tgagtagactttcatgtttgtgaccgaataatattagaataaca |
258 |
Q |
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| T |
1077698 |
tgagtagactttcatgtttgtgaccgaataatattagaataaca |
1077655 |
T |
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