View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21539_high_14 (Length: 251)
Name: NF21539_high_14
Description: NF21539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21539_high_14 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 33081141 - 33080905
Alignment:
| Q |
13 |
aatattgatgtggtaaatagaacctttgcaccatgcttagaacatttttgcatgaaatttggttagaatttaagccaataatgggtgtcaaggaaaaatt |
112 |
Q |
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| T |
33081141 |
aatattgatgtggtaaatagaacctttgcaccatgcttagaacatttttgcatgaaatttggttagaatttaagccaataatgggtgtcaaggaaaaatt |
33081042 |
T |
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| Q |
113 |
atcannnnnnnnnctcacacaaaagatgttgttccctctatatcctccacttgaattgttaatgttaatttagctttcaattaatcagttattttgtaaa |
212 |
Q |
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| T |
33081041 |
atcattttattttctcacacaaaagatgttgttccctctatatcctccacttg--ttgttaatgttaatttagctttcaattaatcagttattttgtaaa |
33080944 |
T |
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| Q |
213 |
aacaaaataaattacctaaagtagtttgaatttagtttg |
251 |
Q |
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| T |
33080943 |
aacaaaataaattacctaaagtagtttgaatttagtttg |
33080905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 243
Target Start/End: Complemental strand, 33084991 - 33084862
Alignment:
| Q |
127 |
tcacacaaaagatgttgttccctctatatcctccacttg-----aattgttaatgttaatt----tagctttcaattaatca----gttattttgtaaaa |
213 |
Q |
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||||||||||||||||||| |||| ||||||||||||| || |||||||||||||| ||||| ||||||||| | |||||||| |||| |
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| T |
33084991 |
tcacacaaaagatgttgtttcctccctatcctccacttgttgttaaatgttaatgttaattaatttagctatcaattaattaattagttatttttcaaaa |
33084892 |
T |
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| Q |
214 |
acaaaataaattacctaaagtagtttgaat |
243 |
Q |
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| T |
33084891 |
acaaaataaattacctaaagtagtttgaat |
33084862 |
T |
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