View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21539_high_2 (Length: 586)
Name: NF21539_high_2
Description: NF21539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21539_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 118 - 567
Target Start/End: Original strand, 43172743 - 43173195
Alignment:
| Q |
118 |
tgtgcgttggattgaaaccatttgaagaaggaaagtagggtttctggttgagagtgaagaggtttgtatgaaagaattgagattatgattgggagtgtta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43172743 |
tgtgcgttggattgaaaccatttgaagaaggaaagtagggtttctggttgagagtgaagaggtttgtatgaaagaattgagattatgattgggagtgtta |
43172842 |
T |
|
| Q |
218 |
agtgtgggatgaattgttgaagattctgtgggttttcgtttttggttagtattgtggttattgttcgtataagttgtcgttcatttcctctgacgtctcc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
43172843 |
agtgtgggatgaattgttgaagattctgtgggttttcgtttttggttagtattgtggttattgtacgtataagttgtcgttcttttcctctgccgtctcc |
43172942 |
T |
|
| Q |
318 |
gccaccaccaccactgccgccggcgacggtgttagtgttcatcatctttctgctttgttcactgttttaggtttcggggggtttttg-ttgaagagaagg |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
43172943 |
gccaccaccaccactgccgccggcgacggtgttagtgttcatcatctttccgctttgttcactgttttaggtttcggggggtttttgcttgaagagaagg |
43173042 |
T |
|
| Q |
417 |
attc------tgattttgattttttaagacataaattttaaaaatacgaaaatgtccaactctagttagaaatttactaccttgaccaaaaataacaaca |
510 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43173043 |
attctgattttgattttgattttttaagacataaattttaaaaatacgaaaatgtccaactctagttagaaatttactaccttgaccaaaaataacaaca |
43173142 |
T |
|
| Q |
511 |
cttgatatacgtacgtacgtggcagaaagagatttttgttttgttgaagctccacca |
567 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43173143 |
cttgata----tacgtacgtggcagaaagagatttttgttttgttgaagctccacca |
43173195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 127; Significance: 3e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 124 - 373
Target Start/End: Original strand, 51297956 - 51298208
Alignment:
| Q |
124 |
ttggattgaaaccatttgaagaaggaaagtagggtttctggttgagagtgaagaggtttgtatgaaagaattgagattatgattgggagtgttaagtgtg |
223 |
Q |
| |
|
|||| ||| ||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
51297956 |
ttggtttggaaccatttgaagaaggaaactagggtttttggttgacagtgaagaggtttgtatgaaaggattgagattatgattgggagtgttaagtgtg |
51298055 |
T |
|
| Q |
224 |
ggatgaattgttgaagattctgtgggttttcgtttttg------gttagtattgtggttattgttcgtataagttgtcgttcatttcctctgacgtctcc |
317 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||| |||| || ||||||||||||| |||| |||||| |||| ||||||| | ||||||| |
|
|
| T |
51298056 |
gaatgaattgttgaagattctgtgggttttcgtttttggtttttgttaatactgtggttattgtttgtatcagttgttgttcttttcctccgccgtctcc |
51298155 |
T |
|
| Q |
318 |
gccaccaccaccactgccgccggcgacggtgttagtgttcatcatctttctgcttt |
373 |
Q |
| |
|
| |||||| ||||| ||||| || ||||||| ||||||| ||| ||| |||||| |
|
|
| T |
51298156 |
gacaccactaccaccgccgctgg---cggtgttcgtgttcaccatgtttatgcttt |
51298208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University