View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21539_high_8 (Length: 392)
Name: NF21539_high_8
Description: NF21539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21539_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 35708348 - 35707973
Alignment:
| Q |
1 |
gaagtttggggttttggactatgcacgtaaagtgtttgatgaaatgccacaccgggatgtggttacttggactgagttgattgttgcgtatgcaagaagt |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35708348 |
gaagtttggggttttggactgtgcacgtaaagtgtttgatgaaatgccacaccgggatgtggttacttggactgagttgattgttgcgtatgcaagaagt |
35708249 |
T |
|
| Q |
101 |
ggtgatatggattccgcgtgtgagttgtttgttgggttacctgttaaggatatggttgcttggacttctatggttactgggtattctcagaatgccatgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35708248 |
ggtgatatggattccgcgtgtgagttgtttgttgggttacctgttaaggatatggttgcttggacttctatggttactgggtattctcagaatgccatgc |
35708149 |
T |
|
| Q |
201 |
cgaagaaagcgttgcagtttttccggaaaatgcgagaggctggtgtagtgactgatgagattacattggttggtgctatttctgcttgtgctcaattggg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
35708148 |
cgaagaaagcgttgcagtttttccggaaaatgcgagaggctggtgtagtgactgatgaaattacattggttggtgctatttctgcttgtgctcaattggg |
35708049 |
T |
|
| Q |
301 |
tgtttctgggtatgctgattggataagggagattgctgagagttctagatttgggtctggaagtaatgtttctgtg |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35708048 |
tgtttctgggtatgctgattggataagggagattgctgagagttctagatttgggtctggaagtaatgtttttgtg |
35707973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 258 - 370
Target Start/End: Complemental strand, 33237159 - 33237045
Alignment:
| Q |
258 |
agattacattggttggtgctatttctgct--tgtgctcaattgggtgtttctgggtatgctgattggataagggagattgctgagagttctagatttggg |
355 |
Q |
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|||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
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| T |
33237159 |
agattaaattggttggtgctatttctactggtgtgctcaattgggtgtttctgggtatgctaattggataagggagattgctgagagttctagatttagg |
33237060 |
T |
|
| Q |
356 |
tctggaagtaatgtt |
370 |
Q |
| |
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| | |||||||||| |
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| T |
33237059 |
tatacaagtaatgtt |
33237045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 258 - 370
Target Start/End: Original strand, 10510677 - 10510791
Alignment:
| Q |
258 |
agattacattggttggtgctatttctgct--tgtgctcaattgggtgtttctgggtatgctgattggataagggagattgctgagagttctagatttggg |
355 |
Q |
| |
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|||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| || |
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| T |
10510677 |
agattaaattggttggtgctatttctactggtgtgctcaattgggtgtttctgggtatgctaattggataagggagattgctgtgagttctagatttagg |
10510776 |
T |
|
| Q |
356 |
tctggaagtaatgtt |
370 |
Q |
| |
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| | |||||||||| |
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|
| T |
10510777 |
tatacaagtaatgtt |
10510791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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