View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21539_low_10 (Length: 309)
Name: NF21539_low_10
Description: NF21539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21539_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 26 - 287
Target Start/End: Original strand, 51033227 - 51033488
Alignment:
| Q |
26 |
aaaaaaggtaacaatctaaataatattctcaactgattttgtacatacccatgaagccgcaaatgttggtggcgaaggatatctcctacgccaacaacat |
125 |
Q |
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| T |
51033227 |
aaaaaacgtaacaatctaaataatattctcaactgattttgtacttacccatgaagccgcaaatgttggtggcgaaggatatctcctacgccaacaacat |
51033326 |
T |
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| Q |
126 |
ccaagaccttccaagcattttcccatattgttaaagcaaatccgcttactctcaaactatcggaagattctaataccaaacttctaacgcctaatctgca |
225 |
Q |
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| T |
51033327 |
ccaagaccttccaagcattttcccatattgttaaagcaaatccgcttactctcaaactatcggaagattctaataccaaacttctaacgcctaatctgca |
51033426 |
T |
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| Q |
226 |
attatcaacatcactattttatttagacagatgagtaaaaggtgataaaaataagtgaaaga |
287 |
Q |
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| T |
51033427 |
attatcaacatcactattttattttgacagatgagtaaaaggtgataaaaataagtgaaaga |
51033488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 88 - 224
Target Start/End: Original strand, 51069973 - 51070109
Alignment:
| Q |
88 |
atgttggtggcgaaggatatctcctacgccaacaacatccaagaccttccaagcattttcccatattgttaaagcaaatccgcttactctcaaactatcg |
187 |
Q |
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| T |
51069973 |
atgtttgtggcggaggatatctccaacaccaacagcatccaaggctttccaagcattttcccatattcctaaagcaaatccagttactctcaaactatct |
51070072 |
T |
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| Q |
188 |
gaagattctaataccaaacttctaacgcctaatctgc |
224 |
Q |
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| T |
51070073 |
gaagattccaataccaaacttcttacacctaacctgc |
51070109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 88 - 239
Target Start/End: Original strand, 51036556 - 51036707
Alignment:
| Q |
88 |
atgttggtggcgaaggatatctcctacgccaacaacatccaagaccttccaagcattttcccatattgttaaagcaaatccgcttactctcaaactatcg |
187 |
Q |
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||||| ||| |||||||| ||||| || |||||||||||||| ||||||||||||||| ||||||| ||||||||||||| || |||||||||| ||| |
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| T |
51036556 |
atgtttgtgacgaaggatgtctccaacaccaacaacatccaatgccttccaagcatttttccatattattaaagcaaatccactcactctcaaaccatcc |
51036655 |
T |
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| Q |
188 |
gaagattctaataccaaacttctaacgcctaatctgcaattatcaacatcac |
239 |
Q |
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| T |
51036656 |
gaagattctaatatcaagcttcgaacgcccaatctacaatcatcaatatcac |
51036707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 64 - 233
Target Start/End: Original strand, 51066805 - 51066974
Alignment:
| Q |
64 |
ttgtacatacccatgaagccgcaaatgttggtggcgaaggatatctcctacgccaacaacatccaagaccttccaagcattttcccatattgttaaagca |
163 |
Q |
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|||||| ||||||||||| | | |||||||||||| ||||| ||| || |||||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
51066805 |
ttgtacttacccatgaagttgtagatgttggtggcggaggatggttccaacaccaacaacatccaacgccttccaagcattttcccataccgttaaagca |
51066904 |
T |
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| Q |
164 |
aatccgcttactctcaaactatcggaagattctaataccaaacttctaacgcctaatctgcaattatcaa |
233 |
Q |
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| T |
51066905 |
aatccaccaactctcaagctatcagaagattctaataccaaactttcaatacctaatctgcaataatcaa |
51066974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 88 - 208
Target Start/End: Complemental strand, 40612751 - 40612631
Alignment:
| Q |
88 |
atgttggtggcgaaggatatctcctacgccaacaacatccaagaccttccaagcattttcccatattgttaaagcaaatccgcttactctcaaactatcg |
187 |
Q |
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|||||||||||| ||||||| ||| || || |||||||||||| ||||||||||||||||||||| |||||||||||||| | |||| ||||||||| |
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| T |
40612751 |
atgttggtggcggaggatatttccaacacctacaacatccaaggccttccaagcattttcccataacgttaaagcaaatccaccgactcgcaaactatct |
40612652 |
T |
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| Q |
188 |
gaagattctaataccaaactt |
208 |
Q |
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| T |
40612651 |
gaagattctaataccaaactt |
40612631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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