View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21539_low_11 (Length: 309)

Name: NF21539_low_11
Description: NF21539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21539_low_11
NF21539_low_11
[»] chr4 (4 HSPs)
chr4 (21-300)||(18525156-18525431)
chr4 (22-88)||(13764291-13764357)
chr4 (22-92)||(16291868-16291938)
chr4 (33-90)||(9760070-9760127)
[»] chr1 (4 HSPs)
chr1 (26-93)||(1930649-1930716)
chr1 (26-92)||(1937172-1937238)
chr1 (22-92)||(28552504-28552574)
chr1 (22-92)||(6285363-6285433)
[»] chr7 (2 HSPs)
chr7 (28-84)||(25696945-25697001)
chr7 (31-93)||(39296580-39296642)
[»] chr5 (1 HSPs)
chr5 (22-92)||(24025099-24025169)
[»] chr3 (2 HSPs)
chr3 (31-73)||(21071670-21071712)
chr3 (32-93)||(34296544-34296605)
[»] chr8 (1 HSPs)
chr8 (22-82)||(2053234-2053294)


Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 21 - 300
Target Start/End: Original strand, 18525156 - 18525431
Alignment:
Q  21 aatagagggctaaaagaacatatttccatatagatagatggtcaacagagcacattttcctaaagatagaggatacaattgnnnnnnnnnnnngttaggg 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||             |||| ||    
T  18525156 aatagagggctaaaagaacatatttccatatagatagatggtcaaaagagcacattttcctaaagatagaggatacaatttttttttttttttgttatgg 18525255  T
Q  121 gtcaaaatcgcaactttattacgtttaaaggatctaaaatacatttgaacattattattttctttgcgatatatgtcatctgatttgagttctaaagggt 220  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||    
T  18525256 gtcaaaatcgcaactttattacgtttaaagggtcaaaaatacatttgaacattattattttctttgcgat----gtcatctgatttgagttctaaagggt 18525351  T
Q  221 caaaaatacatttaaacgttattattttctttaagatgtcacctgatttgagttctaaacccacttatggtctcatgttc 300  Q
    ||||||||||||||||| |||||||||||| || ||||||| |||||||||||| |||||||||||||||||||||||||    
T  18525352 caaaaatacatttaaacattattattttctgtacgatgtcatctgatttgagttataaacccacttatggtctcatgttc 18525431  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 13764357 - 13764291
Alignment:
Q  22 atagagggctaaaagaacatatttccatatagatagatggtcaacagagcacattttcctaaagata 88  Q
    |||||||  ||||||||||||||| |||||||||| | |||||| ||||||||||| ||||||||||    
T  13764357 atagaggtttaaaagaacatattttcatatagatatagggtcaatagagcacatttccctaaagata 13764291  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 92
Target Start/End: Original strand, 16291868 - 16291938
Alignment:
Q  22 atagagggctaaaagaacatatttccatatagatagatggtcaacagagcacattttcctaaagatagagg 92  Q
    |||||||||||||||| ||||||||| || || |||| |||||| |||||| |||| ||| ||||||||||    
T  16291868 atagagggctaaaagagcatatttccctaaagttagagggtcaaaagagcatatttccctgaagatagagg 16291938  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 9760070 - 9760127
Alignment:
Q  33 aaagaacatatttccatatagatagatggtcaacagagcacattttcctaaagataga 90  Q
    |||||||||||||||||||||||| | |||||| ||| || ||||||||||| |||||    
T  9760070 aaagaacatatttccatatagataaagggtcaaaagaacatattttcctaaatataga 9760127  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 1930716 - 1930649
Alignment:
Q  26 agggctaaaagaacatatttccatatagatagatggtcaacagagcacattttcctaaagatagagga 93  Q
    ||||||||| |||||||||| | |||||||||| | |||| ||||||||||||| |||||||||||||    
T  1930716 agggctaaaggaacatattttcgtatagatagaggatcaaaagagcacattttcttaaagatagagga 1930649  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 1937238 - 1937172
Alignment:
Q  26 agggctaaaagaacatatttccatatagatagatggtcaacagagcacattttcctaaagatagagg 92  Q
    |||||||||||||||||||| |||||||||||| |  ||| | ||||||||| ||||||||||||||    
T  1937238 agggctaaaagaacatattttcatatagatagaggaacaaaaaagcacatttccctaaagatagagg 1937172  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 92
Target Start/End: Original strand, 28552504 - 28552574
Alignment:
Q  22 atagagggctaaaagaacatatttccatatagatagatggtcaacagagcacattttcctaaagatagagg 92  Q
    |||||||| ||||||| ||||||| |||| || |||| |||||| |||||| ||||| |||||||||||||    
T  28552504 atagagggttaaaagagcatattttcataaagttagaaggtcaaaagagcatatttttctaaagatagagg 28552574  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 92
Target Start/End: Original strand, 6285363 - 6285433
Alignment:
Q  22 atagagggctaaaagaacatatttccatatagatagatggtcaacagagcacattttcctaaagatagagg 92  Q
    ||||||||  |||||| ||||||| |||| || |||| |||||| |||||| ||||| |||||||||||||    
T  6285363 atagagggtcaaaagagcatattttcataaagttagagggtcaaaagagcatatttttctaaagatagagg 6285433  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 25697001 - 25696945
Alignment:
Q  28 ggctaaaagaacatatttccatatagatagatggtcaacagagcacattttcctaaa 84  Q
    ||||||| ||| |||||| ||||||||||||||||||| ||||||||||| ||||||    
T  25697001 ggctaaatgaatatattttcatatagatagatggtcaaaagagcacatttccctaaa 25696945  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 39296642 - 39296580
Alignment:
Q  31 taaaagaacatatttccatatagatagatggtcaacagagcacattttcctaaagatagagga 93  Q
    |||||||  ||||||||||| || |||| |||||| |||||| |||| |||||||||||||||    
T  39296642 taaaagagtatatttccataaagttagagggtcaaaagagcatatttccctaaagatagagga 39296580  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 92
Target Start/End: Complemental strand, 24025169 - 24025099
Alignment:
Q  22 atagagggctaaaagaacatatttccatatagatagatggtcaacagagcacattttcctaaagatagagg 92  Q
    |||||| | ||||||| ||||||||| || || |||| |||||| |||||| |||| ||||||||||||||    
T  24025169 atagagtgttaaaagagcatatttccgtaaagttagagggtcaaaagagcatatttccctaaagatagagg 24025099  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 73
Target Start/End: Original strand, 21071670 - 21071712
Alignment:
Q  31 taaaagaacatatttccatatagatagatggtcaacagagcac 73  Q
    ||||||||||||||||||||| |||||| |||||| |||||||    
T  21071670 taaaagaacatatttccatatggatagagggtcaaaagagcac 21071712  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 34296544 - 34296605
Alignment:
Q  32 aaaagaacatatttccatatagatagatggtcaacagagcacattttcctaaagatagagga 93  Q
    |||||| |||||||||||| || |||| |||||| |||||| |||| |||||||||| ||||    
T  34296544 aaaagagcatatttccataaagttagagggtcaaaagagcatatttccctaaagataaagga 34296605  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 2053294 - 2053234
Alignment:
Q  22 atagagggctaaaagaacatatttccatatagatagatggtcaacagagcacattttccta 82  Q
    |||||||| ||||||| |||||||||||| || |||||| |||| |||||| |||| ||||    
T  2053294 atagagggttaaaagagcatatttccataaagttagatgatcaaaagagcatatttcccta 2053234  T

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