View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21539_low_15 (Length: 250)

Name: NF21539_low_15
Description: NF21539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21539_low_15
NF21539_low_15
[»] chr8 (11 HSPs)
chr8 (58-197)||(38660076-38660215)
chr8 (58-182)||(6015495-6015618)
chr8 (63-197)||(36940250-36940384)
chr8 (75-147)||(41649724-41649796)
chr8 (58-178)||(22938172-22938292)
chr8 (58-139)||(2455751-2455832)
chr8 (58-154)||(25246211-25246307)
chr8 (57-108)||(35839721-35839772)
chr8 (57-108)||(35840528-35840579)
chr8 (58-139)||(22631308-22631389)
chr8 (58-107)||(43972085-43972134)
[»] scaffold0006 (1 HSPs)
scaffold0006 (59-197)||(72080-72218)
[»] chr5 (9 HSPs)
chr5 (56-174)||(29412815-29412933)
chr5 (58-187)||(4744086-4744215)
chr5 (57-182)||(4301904-4302029)
chr5 (58-142)||(3309489-3309573)
chr5 (58-147)||(5747921-5748010)
chr5 (64-142)||(38735183-38735261)
chr5 (58-107)||(6007653-6007702)
chr5 (58-147)||(26318283-26318372)
chr5 (58-94)||(16689593-16689629)
[»] chr2 (11 HSPs)
chr2 (58-197)||(13389959-13390098)
chr2 (58-191)||(43790344-43790477)
chr2 (53-134)||(40726835-40726916)
chr2 (58-187)||(40745968-40746097)
chr2 (58-141)||(8164371-8164454)
chr2 (58-147)||(9845609-9845698)
chr2 (64-129)||(42950943-42951008)
chr2 (58-154)||(28030250-28030346)
chr2 (57-108)||(41519923-41519974)
chr2 (58-182)||(38739787-38739908)
chr2 (75-108)||(30545433-30545466)
[»] chr3 (10 HSPs)
chr3 (58-197)||(40803520-40803658)
chr3 (58-147)||(44064189-44064278)
chr3 (65-187)||(43786097-43786219)
chr3 (58-139)||(17590985-17591066)
chr3 (58-161)||(39902815-39902918)
chr3 (64-147)||(53714375-53714458)
chr3 (88-154)||(32994955-32995021)
chr3 (58-139)||(36232868-36232949)
chr3 (58-147)||(41585912-41586001)
chr3 (114-174)||(16137281-16137341)
[»] chr7 (14 HSPs)
chr7 (58-197)||(41886748-41886887)
chr7 (64-149)||(42250836-42250921)
chr7 (58-169)||(43014577-43014688)
chr7 (75-191)||(36846758-36846874)
chr7 (64-136)||(14629825-14629897)
chr7 (58-180)||(41531545-41531667)
chr7 (14-57)||(33259323-33259366)
chr7 (58-107)||(31276927-31276976)
chr7 (58-197)||(42031305-42031447)
chr7 (58-107)||(47800178-47800227)
chr7 (58-154)||(40740660-40740756)
chr7 (58-107)||(9094-9143)
chr7 (58-106)||(5064645-5064693)
chr7 (64-147)||(24307728-24307812)
[»] chr1 (8 HSPs)
chr1 (58-187)||(36152990-36153119)
chr1 (58-156)||(44948838-44948936)
chr1 (58-107)||(49420954-49421003)
chr1 (57-105)||(49420083-49420131)
chr1 (57-104)||(46134619-46134666)
chr1 (76-172)||(15982504-15982600)
chr1 (65-161)||(50381464-50381560)
chr1 (64-188)||(51606920-51607044)
[»] chr4 (16 HSPs)
chr4 (58-146)||(34372353-34372441)
chr4 (58-196)||(43780984-43781122)
chr4 (58-196)||(6508936-6509074)
chr4 (75-154)||(32622046-32622127)
chr4 (57-147)||(50261149-50261239)
chr4 (58-108)||(54006728-54006778)
chr4 (75-139)||(23864590-23864654)
chr4 (58-142)||(25891946-25892030)
chr4 (63-147)||(31681122-31681206)
chr4 (70-110)||(52523962-52524002)
chr4 (75-182)||(31805977-31806083)
chr4 (58-108)||(54008452-54008502)
chr4 (58-100)||(54117200-54117242)
chr4 (58-107)||(48569406-48569455)
chr4 (87-140)||(53290237-53290290)
chr4 (58-106)||(232049-232097)
[»] chr6 (7 HSPs)
chr6 (75-139)||(22856367-22856431)
chr6 (66-161)||(17765859-17765954)
chr6 (75-197)||(33077589-33077712)
chr6 (64-182)||(1461974-1462092)
chr6 (58-136)||(4833857-4833935)
chr6 (58-107)||(1770783-1770832)
chr6 (64-108)||(23593121-23593165)
[»] scaffold0051 (1 HSPs)
scaffold0051 (64-147)||(15018-15101)


Alignment Details
Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 58 - 197
Target Start/End: Original strand, 38660076 - 38660215
Alignment:
Q  58 ggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttatttgaatggttgagatctc 157  Q
    |||||||||||||||| |||||||||||| |||||| ||||||||||||||||||| | ||||| |||||||| ||||||||||| |||| |||||||||    
T  38660076 ggtgaggtttagtatgggaaagggaagttgtttcccttgatgggaaagtttaaccacaaccataaatttaatagttttttatttggatggctgagatctc 38660175  T
Q  158 ttacttgataattgttgtaacttttcgatggttattgtgt 197  Q
    ||||||| |||||||||| ||||||  |||||||||||||    
T  38660176 ttacttggtaattgttgtgacttttttatggttattgtgt 38660215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 58 - 182
Target Start/End: Complemental strand, 6015618 - 6015495
Alignment:
Q  58 ggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttatttgaatggttgagatctc 157  Q
    |||||||||||| ||| ||| |||||||||||||||||||||| |||||||||| | || ||||||||||||| |  |||||||| |||||||||||||     
T  6015618 ggtgaggtttagcatg-gaatgggaagttctttcccatgatggaaaagtttaacaagagtcatagatttaatagtaatttatttggatggttgagatcta 6015520  T
Q  158 ttacttgataattgttgtaactttt 182  Q
    |||||||||||  ||||||||||||    
T  6015519 ttacttgataagggttgtaactttt 6015495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 63 - 197
Target Start/End: Original strand, 36940250 - 36940384
Alignment:
Q  63 ggtttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttatttgaatggttgagatctcttact 162  Q
    |||| ||||||  ||| ||||||||||| |||  | ||||||||||||||  |||  ||||||||||| || |||||||  ||||  ||||||| |||||    
T  36940250 ggttcagtatggaaaatggaagttcttttccaccacgggaaagtttaacctgagctgtagatttaatagttctttatttagatggccgagatcttttact 36940349  T
Q  163 tgataattgttgtaacttttcgatggttattgtgt 197  Q
    ||||||||||||||||||||  |||||||||||||    
T  36940350 tgataattgttgtaacttttatatggttattgtgt 36940384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 147
Target Start/End: Complemental strand, 41649796 - 41649724
Alignment:
Q  75 gaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttatttgaatgg 147  Q
    ||||||||||||||||||||| ||||||||||  ||| |||||||||||||||||| ||||||||||| ||||    
T  41649796 gaaagggaagttctttcccatcatgggaaagtcgaactatagccatagatttaatatttttttatttggatgg 41649724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 58 - 178
Target Start/End: Original strand, 22938172 - 22938292
Alignment:
Q  58 ggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttatttgaatggttgagatctc 157  Q
    |||||||||||| | | ||| || ||||||||| |||||||||||||||||||| | |||||||||||||||| |  |||||| | |||| ||||||||     
T  22938172 ggtgaggtttagcacgggaatggtaagttcttttccatgatgggaaagtttaacaagagccatagatttaatagtaatttattcggatggctgagatcta 22938271  T
Q  158 ttacttgataattgttgtaac 178  Q
    || |||| |||  ||||||||    
T  22938272 ttccttggtaaaggttgtaac 22938292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 139
Target Start/End: Original strand, 2455751 - 2455832
Alignment:
Q  58 ggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttat 139  Q
    |||||||||||||||| |||||||||||||||| |||| || |||||||||||  | | ||||  |||||||| ||||||||    
T  2455751 ggtgaggtttagtatgggaaagggaagttcttttccattataggaaagtttaataacaaccattaatttaatatttttttat 2455832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 154
Target Start/End: Original strand, 25246211 - 25246307
Alignment:
Q  58 ggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttatttgaatggttgagat 154  Q
    |||||||||||||||| |||||  || ||||||||| | ||||||||||| ||| | | |||||||| ||||  ||||||| ||| |||||| ||||    
T  25246211 ggtgaggtttagtatgggaaagaaaacttctttcccttcatgggaaagttgaactagaaccatagatataattgttttttaattggatggttaagat 25246307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 35839721 - 35839772
Alignment:
Q  57 cggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagttt 108  Q
    ||||| ||||||| ||| |||||||||||| |||||||||||| ||||||||    
T  35839721 cggtggggtttagcatgggaaagggaagttgtttcccatgatgagaaagttt 35839772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 108
Target Start/End: Complemental strand, 35840579 - 35840528
Alignment:
Q  57 cggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagttt 108  Q
    ||||| ||||||| ||| |||||||||||| ||||||| |||||||||||||    
T  35840579 cggtggggtttagcatgggaaagggaagttgtttcccacgatgggaaagttt 35840528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 139
Target Start/End: Original strand, 22631308 - 22631389
Alignment:
Q  58 ggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttat 139  Q
    |||| ||||||||||  |||||| ||||||||| ||||||||||||| |||||  | | |||| ||||||||| | ||||||    
T  22631308 ggtggggtttagtattggaaaggaaagttcttttccatgatgggaaaatttaatgacaaccattgatttaatattattttat 22631389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 43972134 - 43972085
Alignment:
Q  58 ggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagtt 107  Q
    |||||||||||||||||||| | |||||| |||||||  |||||||||||    
T  43972134 ggtgaggtttagtatgagaatgagaagttgtttcccactatgggaaagtt 43972085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 59 - 197
Target Start/End: Original strand, 72080 - 72218
Alignment:
Q  59 gtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttatttgaatggttgagatctct 158  Q
    ||||||||||| ||||||| || ||||||||| ||||||||||||||||||| || | ||||  |||||||| |||||||||||||||| |||||||| |    
T  72080 gtgaggtttagcatgagaatggaaagttcttttccatgatgggaaagtttaatcacatccatcaatttaatagttttttatttgaatggctgagatcttt 72179  T
Q  159 tacttgataattgttgtaacttttcgatggttattgtgt 197  Q
    |||||| |||||||||| |||||| ||||||||||||||    
T  72180 tacttggtaattgttgtgactttttgatggttattgtgt 72218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 56 - 174
Target Start/End: Complemental strand, 29412933 - 29412815
Alignment:
Q  56 gcggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttatttgaatggttgagatc 155  Q
    ||||||||||||| |||| ||| ||||||||||||||||||||| |||||||||| || | ||||  |||||||| ||||||||||||||||||||||||    
T  29412933 gcggtgaggtttaatatgggaatgggaagttctttcccatgatgagaaagtttaatcacatccatcaatttaatagttttttatttgaatggttgagatc 29412834  T
Q  156 tcttacttgataattgttg 174  Q
    | ||||||| |||||||||    
T  29412833 ttttacttggtaattgttg 29412815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 58 - 187
Target Start/End: Complemental strand, 4744215 - 4744086
Alignment:
Q  58 ggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttatttgaatggttgagatctc 157  Q
    |||| ||||||||||| ||||||||| ||||||  ||| || | ||||||||| ||||| ||| ||||||||||||||||| ||| |||| | ||||||     
T  4744215 ggtggggtttagtatgggaaagggaacttctttttcataatagaaaagtttaatcatagtcattgatttaataattttttaattggatggcttagatcta 4744116  T
Q  158 ttacttgataattgttgtaacttttcgatg 187  Q
    ||||||| |||||||| |||||||| ||||    
T  4744115 ttacttgttaattgttataactttttgatg 4744086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 57 - 182
Target Start/End: Original strand, 4301904 - 4302029
Alignment:
Q  57 cggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttatttgaatggttgagatct 156  Q
    ||||| |||||| ||||  |||||||||||||||||||| ||||||||||  ||| | |||||||||||||||| ||||||||||| |||| | |||||     
T  4301904 cggtggggtttaatatggaaaagggaagttctttcccatcatgggaaagtcgaactaaagccatagatttaatatttttttatttggatggctaagatcc 4302003  T
Q  157 cttacttgataattgttgtaactttt 182  Q
     | || || |||||||| ||||||||    
T  4302004 atgacctggtaattgttctaactttt 4302029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 58 - 142
Target Start/End: Original strand, 3309489 - 3309573
Alignment:
Q  58 ggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttatttg 142  Q
    |||||||||||| ||| |||||||||||||||||| |||||||||||||| ||||| | ||||  |||||||| ||||| |||||    
T  3309489 ggtgaggtttagcatgggaaagggaagttctttcctatgatgggaaagttcaaccacaaccatgaatttaatagtttttaatttg 3309573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 58 - 147
Target Start/End: Original strand, 5747921 - 5748010
Alignment:
Q  58 ggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttatttgaatgg 147  Q
    |||| ||||||||||| ||||| | ||||||||||| | ||||||||||| |||||  |||||||||||| || ||||||| ||||||||    
T  5747921 ggtggggtttagtatgggaaagaggagttctttcccttcatgggaaagttgaaccacggccatagatttattacttttttaattgaatgg 5748010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 64 - 142
Target Start/End: Original strand, 38735183 - 38735261
Alignment:
Q  64 gtttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttatttg 142  Q
    |||||| |||||||| | || |||||||||||||||| ||| || ||| ||||||||| |||||||| || ||||||||    
T  38735183 gtttagcatgagaaaagaaacttctttcccatgatggaaaaattaaacaatagccataaatttaatatttgtttatttg 38735261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 6007702 - 6007653
Alignment:
Q  58 ggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagtt 107  Q
    |||| ||||||| ||| ||||||||| || ||||||||||||||||||||    
T  6007702 ggtggggtttagaatgggaaagggaatttgtttcccatgatgggaaagtt 6007653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 147
Target Start/End: Complemental strand, 26318372 - 26318283
Alignment:
Q  58 ggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttatttgaatgg 147  Q
    ||||| |||||||||| |||||| || ||||||||  | ||||||||||| ||||| | |||||||| ||||  ||||||| ||| ||||    
T  26318372 ggtgaagtttagtatgggaaaggaaacttctttcctttcatgggaaagttaaaccagaaccatagatataattgttttttaattggatgg 26318283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 94
Target Start/End: Original strand, 16689593 - 16689629
Alignment:
Q  58 ggtgaggtttagtatgagaaagggaagttctttccca 94  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  16689593 ggtggggtttagtatgggaaagggaagttctttccca 16689629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 58 - 197
Target Start/End: Original strand, 13389959 - 13390098
Alignment:
Q  58 ggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttatttgaatggttgagatctc 157  Q
    |||||||||||| ||||||| | ||||||||||| |||||||||||||||||| || | ||||  |||||||| |||||||||||||||| ||||||||     
T  13389959 ggtgaggtttagcatgagaatgagaagttctttctcatgatgggaaagtttaatcacatccatcaatttaatagttttttatttgaatggctgagatctt 13390058  T
Q  158 ttacttgataattgttgtaacttttcgatggttattgtgt 197  Q
    |||| || |||||||||| | ||||  |||||||||||||    
T  13390059 ttacctggtaattgttgtgatttttttatggttattgtgt 13390098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 58 - 191
Target Start/End: Complemental strand, 43790477 - 43790344
Alignment:
Q  58 ggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttatttgaatggttgagatctc 157  Q
    ||||| ||||| ||||  ||||||||||||||||| || ||||||||||||||||| | |||| ||||||||| |||||||||||  ||| | ||||||     
T  43790477 ggtgaagtttaatatggaaaagggaagttctttcctatcatgggaaagtttaaccacaaccattgatttaatagttttttatttgggtggcttagatcta 43790378  T
Q  158 ttacttgataattgttgtaacttttcgatggtta 191  Q
    | ||||| ||||||||||||||||| ||||||||    
T  43790377 tgacttggtaattgttgtaactttttgatggtta 43790344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 53 - 134
Target Start/End: Complemental strand, 40726916 - 40726835
Alignment:
Q  53 taagcggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattt 134  Q
    |||| |||||||||||| |||||||||| |||||||||| ||||||||||||||||||||| | ||||||||||||| ||||    
T  40726916 taagaggtgaggtttagcatgagaaaggaaagttctttctcatgatgggaaagtttaaccacaaccatagatttaattattt 40726835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 58 - 187
Target Start/End: Complemental strand, 40746097 - 40745968
Alignment:
Q  58 ggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttatttgaatggttgagatctc 157  Q
    |||| ||||||||||| ||||| ||| ||||||||||| ||| ||||||||||||| |  ||| ||||||||| ||||||| ||| |||| | ||||||     
T  40746097 ggtggggtttagtatgggaaagagaacttctttcccataatgagaaagtttaaccacaatcattgatttaatagttttttaattggatggcttagatcta 40745998  T
Q  158 ttacttgataattgttgtaacttttcgatg 187  Q
    | ||||| |||||||| |||||||| ||||    
T  40745997 tcacttgttaattgttataactttttgatg 40745968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 141
Target Start/End: Complemental strand, 8164454 - 8164371
Alignment:
Q  58 ggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttattt 141  Q
    |||| ||||||||||| |||| | ||||| |||||||| |||| |||||| || || | ||||| |||||||||||||||||||    
T  8164454 ggtggggtttagtatgggaaaagaaagttttttcccatcatggaaaagttgaatcacaaccatatatttaataattttttattt 8164371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 147
Target Start/End: Original strand, 9845609 - 9845698
Alignment:
Q  58 ggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttatttgaatgg 147  Q
    |||| ||||||||||| |||| || |||||||| |  | ||||||||||| ||||| | ||||||||||| || ||||||| ||||||||    
T  9845609 ggtggggtttagtatgggaaatgggagttcttttcgtttatgggaaagttgaaccacaaccatagatttattacttttttaattgaatgg 9845698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 129
Target Start/End: Complemental strand, 42951008 - 42950943
Alignment:
Q  64 gtttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaat 129  Q
    |||||||||| |||||||||||| ||| || ||||| ||||||||||| | | |||||||||||||    
T  42951008 gtttagtatgggaaagggaagttgttttccttgatgagaaagtttaactacaaccatagatttaat 42950943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 154
Target Start/End: Original strand, 28030250 - 28030346
Alignment:
Q  58 ggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttatttgaatggttgagat 154  Q
    |||||||||||| ||| |||||| ||  | |||  |||||||||||||| || |||   |||||||| ||||||| |||||||| ||||||||||||    
T  28030250 ggtgaggtttagcatgggaaaggaaaaatatttttcatgatgggaaagtctatccaggaccatagatataataatattttatttcaatggttgagat 28030346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 108
Target Start/End: Complemental strand, 41519974 - 41519923
Alignment:
Q  57 cggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagttt 108  Q
    |||||| |||||||||| |||||||||||| |||||||  ||||||||||||    
T  41519974 cggtgaagtttagtatgggaaagggaagttttttcccaccatgggaaagttt 41519923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 182
Target Start/End: Complemental strand, 38739908 - 38739787
Alignment:
Q  58 ggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttatttgaatggttgagatctc 157  Q
    |||||||||||| ||| ||||||||| ||||||||    |||| |||||| || || ||||||  |||||||| ||||||||||||| || |  |||||     
T  38739908 ggtgaggtttagcatgggaaagggaaattctttcc---tatggaaaagttaaatcacagccattaatttaatagttttttatttgaacggctaggatctg 38739812  T
Q  158 ttacttgataattgttgtaactttt 182  Q
    | || || |||| ||||||||||||    
T  38739811 tgacctggtaatggttgtaactttt 38739787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 30545466 - 30545433
Alignment:
Q  75 gaaagggaagttctttcccatgatgggaaagttt 108  Q
    |||||||||||| |||||||||||||||||||||    
T  30545466 gaaagggaagttgtttcccatgatgggaaagttt 30545433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 58 - 197
Target Start/End: Complemental strand, 40803658 - 40803520
Alignment:
Q  58 ggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttatttgaatggttgagatctc 157  Q
    ||||||||||||||||  ||||| || || |||    ||||||||||||||||||| | ||||| |||||||| ||||||||||  ||||||||||||||    
T  40803658 ggtgaggtttagtatggaaaaggaaaattattttttttgatgggaaagtttaaccacaaccataaatttaatagttttttatttagatggttgagatctc 40803559  T
Q  158 ttacttgataattgttgtaacttttcgatggttattgtgt 197  Q
    ||||||||| |||||||| |||||| ||||||||||||||    
T  40803558 ttacttgattattgttgtgactttt-gatggttattgtgt 40803520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 58 - 147
Target Start/End: Original strand, 44064189 - 44064278
Alignment:
Q  58 ggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttatttgaatgg 147  Q
    |||| ||| |||||||  |||||||||||||||||||| ||||||||||| ||||| | |||||||||||||| ||||||||||||||||    
T  44064189 ggtggggtatagtatggaaaagggaagttctttcccatcatgggaaagttgaaccacaaccatagatttaatacttttttatttgaatgg 44064278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 65 - 187
Target Start/End: Complemental strand, 43786219 - 43786097
Alignment:
Q  65 tttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttatttgaatggttgagatctcttacttg 164  Q
    ||||||||| ||||||||  ||||||||||| ||||||||||||||||| | |||| ||||||||| ||||||  ||| |||| | |||||| | |||||    
T  43786219 tttagtatgggaaagggagcttctttcccataatgggaaagtttaaccacaaccattgatttaatagttttttgattggatggcttagatctatcacttg 43786120  T
Q  165 ataattgttgtaacttttcgatg 187  Q
     |||||||| |||||||| ||||    
T  43786119 ttaattgttataactttttgatg 43786097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 139
Target Start/End: Complemental strand, 17591066 - 17590985
Alignment:
Q  58 ggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttat 139  Q
    ||||| ||||| |||| |||| | ||||||| |||||||||||||||||| ||||| | ||||||||  |||||||||||||    
T  17591066 ggtgaagtttaatatgggaaaagaaagttctatcccatgatgggaaagttcaaccacaaccatagataaaataattttttat 17590985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 161
Target Start/End: Complemental strand, 39902918 - 39902815
Alignment:
Q  58 ggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttatttgaatggttgagatctc 157  Q
    |||| |||||||||||||||| | ||||||||||| ||||||||||| |||||  | | || | ||||||||| |||||||| || |||||  ||||||     
T  39902918 ggtggggtttagtatgagaaaagaaagttctttcctatgatgggaaaatttaataacaaccgttgatttaatatttttttatgtgtatggtctagatctg 39902819  T
Q  158 ttac 161  Q
    ||||    
T  39902818 ttac 39902815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 147
Target Start/End: Complemental strand, 53714458 - 53714375
Alignment:
Q  64 gtttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttatttgaatgg 147  Q
    |||||| ||| ||||||||| ||||||||||  ||||||||||||||||| | |||||  | ||||| | ||||||||| ||||    
T  53714458 gtttagcatgggaaagggaaattctttcccactatgggaaagtttaaccacaaccataattataatagtattttatttggatgg 53714375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 32994955 - 32995021
Alignment:
Q  88 tttcccatgatgggaaagtttaaccatagccatagatttaataattttttatttgaatggttgagat 154  Q
    |||||||| ||||||||||| |||||  | ||||||||||||| ||||| ||||| |||||| ||||    
T  32994955 tttcccatcatgggaaagttaaaccaaggtcatagatttaatattttttaatttggatggtttagat 32995021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 139
Target Start/End: Original strand, 36232868 - 36232949
Alignment:
Q  58 ggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttat 139  Q
    |||| ||||||||||| |||||| |||||||||||||||||   |||||||||  | | |||| ||||||||| | ||||||    
T  36232868 ggtggggtttagtatgggaaaggaaagttctttcccatgataaaaaagtttaatgacaaccattgatttaatattattttat 36232949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 147
Target Start/End: Complemental strand, 41586001 - 41585912
Alignment:
Q  58 ggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttatttgaatgg 147  Q
    |||| |||||||||||  |||| | ||||||||  | | ||||||||||| |||||  |||||||||||| || ||||||| ||||||||    
T  41586001 ggtggggtttagtatggaaaagaggagttctttttcttcatgggaaagttgaaccacggccatagatttattacttttttaattgaatgg 41585912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 16137281 - 16137341
Alignment:
Q  114 tagccatagatttaataattttttatttgaatggttgagatctcttacttgataattgttg 174  Q
    ||||||| ||||||||| |||||||||||||||||  ||||   ||||||| |||||||||    
T  16137281 tagccattgatttaatagttttttatttgaatggtcaagattaattacttggtaattgttg 16137341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 58 - 197
Target Start/End: Original strand, 41886748 - 41886887
Alignment:
Q  58 ggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttatttgaatggttgagatctc 157  Q
    ||||| |||||| |||  |||||||| ||||||||||| |||| ||||||||| ||||||||||||||||||| ||||||||||| |||| | ||||||     
T  41886748 ggtgaagtttagcatggaaaagggaaattctttcccataatggaaaagtttaagcatagccatagatttaatagttttttatttggatggcttagatctt 41886847  T
Q  158 ttacttgataattgttgtaacttttcgatggttattgtgt 197  Q
    |||| || |||  ||||| |||||| ||||| ||||||||    
T  41886848 ttacctggtaagggttgtgactttttgatgggtattgtgt 41886887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 64 - 149
Target Start/End: Original strand, 42250836 - 42250921
Alignment:
Q  64 gtttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttatttgaatggtt 149  Q
    |||||||||| ||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||| || ||||||    
T  42250836 gtttagtatgggaaagagaagttctttcccatgatggaaaaatttaaccatagccatagatttaatagttttttatatggatggtt 42250921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 58 - 169
Target Start/End: Original strand, 43014577 - 43014688
Alignment:
Q  58 ggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttatttgaatggttgagatctc 157  Q
    |||||||||||||||| |||||  |||||||||| ||||||||||||||||||  |||||||| ||||||||| |||||||| || |||| | ||||||     
T  43014577 ggtgaggtttagtatgggaaagaaaagttctttctcatgatgggaaagtttaataatagccattgatttaatatttttttatatggatggctcagatctg 43014676  T
Q  158 ttacttgataat 169  Q
    ||||||| ||||    
T  43014677 ttacttggtaat 43014688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 75 - 191
Target Start/End: Complemental strand, 36846874 - 36846758
Alignment:
Q  75 gaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttatttgaatggttgagatctcttacttgataattgttg 174  Q
    |||||| ||||| |||||||| ||| ||||||||||||| |  ||| ||||||||| |||||||||||||||| | |||||| | ||||| |||||||||    
T  36846874 gaaaggaaagttttttcccatcatgagaaagtttaaccacaatcattgatttaatagttttttatttgaatggcttagatctatgacttggtaattgttg 36846775  T
Q  175 taacttttcgatggtta 191  Q
    ||||||||  |||||||    
T  36846774 taacttttttatggtta 36846758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 64 - 136
Target Start/End: Original strand, 14629825 - 14629897
Alignment:
Q  64 gtttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttt 136  Q
    |||||||||| |||||||||||||||| |||| ||||||||||| ||||| | |||||||||||||| |||||    
T  14629825 gtttagtatgggaaagggaagttcttttccatcatgggaaagttgaaccacaaccatagatttaatagttttt 14629897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 58 - 180
Target Start/End: Complemental strand, 41531667 - 41531545
Alignment:
Q  58 ggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttatttgaatggttgagatctc 157  Q
    |||| ||||||||||  |||||||||||||||| ||||||| ||||||||||||||   |||| ||||||||| ||||  ||||| |||| | ||||||     
T  41531667 ggtggggtttagtataggaaagggaagttcttttccatgataggaaagtttaaccacgtccatggatttaatagttttaaatttggatggctaagatctt 41531568  T
Q  158 ttacttgataattgttgtaactt 180  Q
    |||| || |||||| | ||||||    
T  41531567 ttacctgctaattgctttaactt 41531545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 33259323 - 33259366
Alignment:
Q  14 tactgcacttaaaaaatctggataatataataattaaggtaagc 57  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  33259323 tactgcacttaataaatctggataatataataattaaggtaagc 33259366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 31276927 - 31276976
Alignment:
Q  58 ggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagtt 107  Q
    |||||| ||||||||| |||||| ||||||||||||||||||||||||||    
T  31276927 ggtgagatttagtatgggaaaggaaagttctttcccatgatgggaaagtt 31276976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 197
Target Start/End: Complemental strand, 42031447 - 42031305
Alignment:
Q  58 ggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaata--attttttatttgaatggttgagatc 155  Q
    ||||| |||||||||| |||||| ||||| |||| |||  ||| |||||||||| ||| || |||||||||||   ||||||||||| |||||  | |||    
T  42031447 ggtgaagtttagtatgggaaaggaaagttgtttctcatattggaaaagtttaacaataaccttagatttaatatttttttttatttggatggtacatatc 42031348  T
Q  156 tcttacttgataattg-ttgtaacttttcgatggttattgtgt 197  Q
    | |||| | ||||| | ||| ||||||| ||||||||||||||    
T  42031347 tgttaccttataatggtttgaaactttttgatggttattgtgt 42031305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 47800227 - 47800178
Alignment:
Q  58 ggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagtt 107  Q
    |||||||||||||||| |||||||||||  || |||||||||||||||||    
T  47800227 ggtgaggtttagtatgggaaagggaagtagttccccatgatgggaaagtt 47800178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 154
Target Start/End: Original strand, 40740660 - 40740756
Alignment:
Q  58 ggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttatttgaatggttgagat 154  Q
    ||||| |||||| ||| |||||| || || ||||||||||||||||| | || |||   |||||||| ||||||| |||||||| ||| ||||||||    
T  40740660 ggtgatgtttagcatgggaaaggaaaattgtttcccatgatgggaaaatctatccaggaccatagatataataatattttatttcaatagttgagat 40740756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 9143 - 9094
Alignment:
Q  58 ggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagtt 107  Q
    |||||||||||||||| |||||||||||  |||  |||||||||||||||    
T  9143 ggtgaggtttagtatgggaaagggaagtagtttttcatgatgggaaagtt 9094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 5064693 - 5064645
Alignment:
Q  58 ggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagt 106  Q
    |||| ||||||| ||| ||| ||||||||||||||||| ||||||||||    
T  5064693 ggtggggtttagcatgggaatgggaagttctttcccatcatgggaaagt 5064645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 147
Target Start/End: Complemental strand, 24307812 - 24307728
Alignment:
Q  64 gtttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagattta-ataattttttatttgaatgg 147  Q
    |||||||||| ||||||| |||||||| || | ||||||||||| ||||| | ||||| |||||  || ||||||| ||||||||    
T  24307812 gtttagtatgggaaaggggagttcttttccttcatgggaaagttgaaccacaaccataaatttatttacttttttaattgaatgg 24307728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 58 - 187
Target Start/End: Original strand, 36152990 - 36153119
Alignment:
Q  58 ggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttatttgaatggttgagatctc 157  Q
    |||| ||||||||||| ||||| ||| ||||||||||| ||| ||||||||||||| |  ||| ||||||||| ||||||| ||| |||| | ||||||     
T  36152990 ggtggggtttagtatgggaaagagaacttctttcccataatgagaaagtttaaccacaatcattgatttaatagttttttaattggatggcttagatcta 36153089  T
Q  158 ttacttgataattgttgtaacttttcgatg 187  Q
    | ||||| |||||||| |||||||| ||||    
T  36153090 tcacttgttaattgttataactttttgatg 36153119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 156
Target Start/End: Complemental strand, 44948936 - 44948838
Alignment:
Q  58 ggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttatttgaatggttgagatct 156  Q
    |||||||||||||||| |||||| |||||||||||||| ||||||||| | | ||| | ||||||||||| || || || ||||| |||| || |||||    
T  44948936 ggtgaggtttagtatgggaaaggaaagttctttcccataatgggaaagctcagccacaaccatagatttattagttcttaatttggatggctgggatct 44948838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 49421003 - 49420954
Alignment:
Q  58 ggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagtt 107  Q
    |||||||||||||||| |||||||||||| ||||||||||||| ||||||    
T  49421003 ggtgaggtttagtatgggaaagggaagttgtttcccatgatggaaaagtt 49420954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 49420083 - 49420131
Alignment:
Q  57 cggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaag 105  Q
    ||||||||||||||||| |||||| ||||| ||||||||||||||||||    
T  49420083 cggtgaggtttagtatgggaaaggaaagttgtttcccatgatgggaaag 49420131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 46134666 - 46134619
Alignment:
Q  57 cggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaa 104  Q
    ||||| ||||||||||| |||||||||||| |||||||| ||||||||    
T  46134666 cggtgtggtttagtatgggaaagggaagttgtttcccatcatgggaaa 46134619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 172
Target Start/End: Original strand, 15982504 - 15982600
Alignment:
Q  76 aaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttatttgaatggttgagatctcttacttgataattgt 172  Q
    ||||| ||||| ||||||||||||||||||  ||| |||  |||||||| ||||| | || ||||| |||| |||||||   |||| ||||||||||    
T  15982504 aaaggaaagttgtttcccatgatgggaaaggctaagcatgaccatagatataatagtattatatttcaatgattgagattgtttacctgataattgt 15982600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 161
Target Start/End: Original strand, 50381464 - 50381560
Alignment:
Q  65 tttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttatttgaatggttgagatctcttac 161  Q
    ||||||||||||| ||| |||||||| || ||||||||||||| || | |  |||| ||| ||||| |||||||||  ||||| || ||||| ||||    
T  50381464 tttagtatgagaatggggagttcttttccttgatgggaaagttgaatcttgaccattgatataatagttttttattccaatggatgtgatcttttac 50381560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 188
Target Start/End: Original strand, 51606920 - 51607044
Alignment:
Q  64 gtttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttatttgaatggttgagatctcttactt 163  Q
    |||||| ||| | |||| ||||| |||||||||||||||||||| || ||   |||||||| || || ||||||||||  |||| |||||| | |||| |    
T  51606920 gtttagcatgggcaaggaaagttgtttcccatgatgggaaagttgaagcaggaccatagatatattacttttttattttgatggctgagatttgttacct 51607019  T
Q  164 gataattgttgtaacttttcgatgg 188  Q
    | ||||||   |||||||| |||||    
T  51607020 gctaattgaattaactttttgatgg 51607044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 58 - 146
Target Start/End: Original strand, 34372353 - 34372441
Alignment:
Q  58 ggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttatttgaatg 146  Q
    |||| ||||||| ||| ||| | |||||||||| ||||||||| |||||||||| | | ||||||||||||||||||||||| ||||||    
T  34372353 ggtggggtttagcatgggaatgagaagttcttttccatgatggaaaagtttaacaacaaccatagatttaataattttttatgtgaatg 34372441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 58 - 196
Target Start/End: Complemental strand, 43781122 - 43780984
Alignment:
Q  58 ggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttatttgaatggttgagatctc 157  Q
    |||||||||||| ||| |||| ||||||| ||| | |||||||||||||| ||||| | |||| ||||||||| ||||| ||||| |||  | |||||      
T  43781122 ggtgaggtttagcatgggaaaaggaagtttttttctatgatgggaaagttcaaccacaaccatggatttaatagtttttaatttggatgactaagatcat 43781023  T
Q  158 ttacttgataattgttgtaacttttcgatggttattgtg 196  Q
    |||| ||||||||| | |||||| | ||||| |||||||    
T  43781022 ttacctgataattgctttaacttattgatgggtattgtg 43780984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 196
Target Start/End: Original strand, 6508936 - 6509074
Alignment:
Q  58 ggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttatttgaatggttgagatctc 157  Q
    |||||||||||  ||| |||||| ||||| |||||||||||||||||| | | ||| |  |||||||||| || ||||| ||||| |||| || |||||     
T  6508936 ggtgaggtttaacatgggaaaggaaagttatttcccatgatgggaaagctcagccacaatcatagatttattagtttttaatttggatggctgggatctt 6509035  T
Q  158 ttacttgataattgttgtaacttttcgatggttattgtg 196  Q
    ||||  | |||||| | |||||| | ||||| |||||||    
T  6509036 ttacccggtaattgctttaacttattgatgggtattgtg 6509074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 75 - 154
Target Start/End: Original strand, 32622046 - 32622127
Alignment:
Q  75 gaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaata--attttttatttgaatggttgagat 154  Q
    |||||||| ||||||| | || ||||||||||| ||||| | ||||||||||||||   |||||||||||||||| ||||||    
T  32622046 gaaagggacgttcttttctatcatgggaaagttgaaccacaaccatagatttaatagttttttttatttgaatggctgagat 32622127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 147
Target Start/End: Complemental strand, 50261239 - 50261149
Alignment:
Q  57 cggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttatttgaatgg 147  Q
    ||||||| ||||||||||||||||| | ||||||||| | |||||||||| |||  | | ||||||||||| || || |||||||| ||||    
T  50261239 cggtgagatttagtatgagaaaggggaattctttccctttatgggaaagtataagtacaaccatagatttattacttctttatttggatgg 50261149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 54006728 - 54006778
Alignment:
Q  58 ggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagttt 108  Q
    |||||||||||||||| ||| |||||||| |||||||| ||||||||||||    
T  54006728 ggtgaggtttagtatgggaatgggaagttgtttcccatcatgggaaagttt 54006778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 139
Target Start/End: Original strand, 23864590 - 23864654
Alignment:
Q  75 gaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttat 139  Q
    ||||||||||||||||| | |||||| |||||||||  ||||| || ||||||||| ||||||||    
T  23864590 gaaagggaagttctttctcttgatggaaaagtttaataatagcgattgatttaatatttttttat 23864654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 142
Target Start/End: Complemental strand, 25892030 - 25891946
Alignment:
Q  58 ggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttatttg 142  Q
    |||||||||||||||| ||||||  |||| |||| ||||||||||||||| || ||| || || ||| ||||| ||||| |||||    
T  25892030 ggtgaggtttagtatgggaaaggatagttatttctcatgatgggaaagttaaagcatggcaattgatataatactttttaatttg 25891946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 147
Target Start/End: Complemental strand, 31681206 - 31681122
Alignment:
Q  63 ggtttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttatttgaatgg 147  Q
    |||||| |||| |||||| |||||||||||||| |||  |||||| ||||| | ||||| ||||| || ||||||||||| ||||    
T  31681206 ggtttaatatgggaaaggaaagttctttcccatcatgtaaaagttgaaccacaaccataaatttattagttttttatttggatgg 31681122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 52524002 - 52523962
Alignment:
Q  70 tatgagaaagggaagttctttcccatgatgggaaagtttaa 110  Q
    |||| |||||| |||||||||||||||||||||||||||||    
T  52524002 tatgggaaaggaaagttctttcccatgatgggaaagtttaa 52523962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 182
Target Start/End: Original strand, 31805977 - 31806083
Alignment:
Q  75 gaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttatttgaatggttgagatctcttacttgataattgttg 174  Q
    |||||||||||||||| |||| ||||||||||| ||| | | ||||| ||||||| | |||||||||| || | | |||| | | || ||||||| ||||    
T  31805977 gaaagggaagttcttttccatcatgggaaagttgaactacaaccataaatttaat-agtttttatttggatagctaagatttgtgacctgataatggttg 31806075  T
Q  175 taactttt 182  Q
    ||||||||    
T  31806076 taactttt 31806083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 54008502 - 54008452
Alignment:
Q  58 ggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagttt 108  Q
    |||||||||||||||| ||| |||||||| ||||| || ||||||||||||    
T  54008502 ggtgaggtttagtatgggaatgggaagttgtttccaatcatgggaaagttt 54008452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 100
Target Start/End: Complemental strand, 54117242 - 54117200
Alignment:
Q  58 ggtgaggtttagtatgagaaagggaagttctttcccatgatgg 100  Q
    |||||||||||||||| ||||||  ||||||||||||||||||    
T  54117242 ggtgaggtttagtatgggaaaggatagttctttcccatgatgg 54117200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 48569406 - 48569455
Alignment:
Q  58 ggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagtt 107  Q
    |||||||||||  |||  ||||||||||| ||||||||||||||||||||    
T  48569406 ggtgaggtttaacatggaaaagggaagttgtttcccatgatgggaaagtt 48569455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 140
Target Start/End: Original strand, 53290237 - 53290290
Alignment:
Q  87 ctttcccatgatgggaaagtttaaccatagccatagatttaataattttttatt 140  Q
    |||||||||||||| |||||| ||| |||| ||||||||||||| || ||||||    
T  53290237 ctttcccatgatggaaaagttgaacaatagtcatagatttaatatttgtttatt 53290290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 232097 - 232049
Alignment:
Q  58 ggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagt 106  Q
    |||| ||||||||||| |||||||||||| |||||||  ||||||||||    
T  232097 ggtggggtttagtatgggaaagggaagttgtttcccaccatgggaaagt 232049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 139
Target Start/End: Original strand, 22856367 - 22856431
Alignment:
Q  75 gaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttat 139  Q
    ||||||||||||||||||| ||||||||||| ||||  |||||||| ||||||||| ||||||||    
T  22856367 gaaagggaagttctttcccttgatgggaaagcttaataatagccattgatttaatatttttttat 22856431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 66 - 161
Target Start/End: Complemental strand, 17765954 - 17765859
Alignment:
Q  66 ttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttatttgaatggttgagatctcttac 161  Q
    |||||||| |||| ||||||| |||||||||||||| ||||||||  | | |||||| |||||||||||||||| || |||||  |||||| ||||    
T  17765954 ttagtatgggaaaaggaagttatttcccatgatgggtaagtttaataacatccatagttttaataattttttatgtggatggtccagatctattac 17765859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 197
Target Start/End: Original strand, 33077589 - 33077712
Alignment:
Q  75 gaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttatttgaatggttgagatctcttacttgataattg-tt 173  Q
    ||||||||||||||||||| |||||| |||||||||  |||| ||| ||||||||| |||||||| || ||||||  ||||| |||| | ||||| | ||    
T  33077589 gaaagggaagttctttcccttgatggaaaagtttaataatagtcattgatttaatatttttttatgtggatggtttggatctattacctcataatggttt 33077688  T
Q  174 gtaacttttcgatggttattgtgt 197  Q
    | ||||||| | ||| ||||||||    
T  33077689 gaaactttttgttggctattgtgt 33077712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 64 - 182
Target Start/End: Complemental strand, 1462092 - 1461974
Alignment:
Q  64 gtttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttatttgaatggttgagatctcttactt 163  Q
    |||||||||| |||| | || ||||||||||||||||||||||||||      |||| ||| || | ||||||||||  ||||||| |||||| ||||||    
T  1462092 gtttagtatgggaaaagaaatttctttcccatgatgggaaagtttaatacggaccattgatatattgattttttattcaaatggttcagatctattactt 1461993  T
Q  164 gataattgttgtaactttt 182  Q
    | || ||||| ||||||||    
T  1461992 gctacttgttttaactttt 1461974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 136
Target Start/End: Complemental strand, 4833935 - 4833857
Alignment:
Q  58 ggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttt 136  Q
    ||||| ||||| |||| |||||  ||||||||||  |||||||||||||| ||||| | |||||||| |||||||||||    
T  4833935 ggtgaagtttaatatgggaaagaaaagttctttcttatgatgggaaagttcaaccacaaccatagatataataattttt 4833857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 1770832 - 1770783
Alignment:
Q  58 ggtgaggtttagtatgagaaagggaagttctttcccatgatgggaaagtt 107  Q
    |||||||||||||||| |||||||||||  || |||||||||||||||||    
T  1770832 ggtgaggtttagtatgggaaagggaagtagttccccatgatgggaaagtt 1770783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 23593121 - 23593165
Alignment:
Q  64 gtttagtatgagaaagggaagttctttcccatgatgggaaagttt 108  Q
    |||||| ||| ||| |||||||| |||||||||||||||||||||    
T  23593121 gtttagcatgggaatgggaagttgtttcccatgatgggaaagttt 23593165  T

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Target: scaffold0051 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 147
Target Start/End: Complemental strand, 15101 - 15018
Alignment:
Q  64 gtttagtatgagaaagggaagttctttcccatgatgggaaagtttaaccatagccatagatttaataattttttatttgaatgg 147  Q
    |||||| ||| ||| | ||||||||||||||  |||||||| |||||||| | |||||||| ||||| | ||||||||| ||||    
T  15101 gtttagcatgggaatgagaagttctttcccaccatgggaaaatttaaccacaaccatagatataatagtattttatttggatgg 15018  T

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