View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21539_low_16 (Length: 249)

Name: NF21539_low_16
Description: NF21539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21539_low_16
NF21539_low_16
[»] chr5 (4 HSPs)
chr5 (11-249)||(40516664-40516902)
chr5 (122-170)||(42910475-42910523)
chr5 (128-187)||(5173786-5173845)
chr5 (127-168)||(8825465-8825506)
[»] chr7 (3 HSPs)
chr7 (104-172)||(39887629-39887697)
chr7 (123-168)||(36729584-36729629)
chr7 (122-168)||(47430762-47430808)
[»] chr1 (3 HSPs)
chr1 (128-195)||(43049436-43049503)
chr1 (109-168)||(38577926-38577986)
chr1 (128-170)||(13697233-13697275)
[»] scaffold0020 (1 HSPs)
scaffold0020 (122-159)||(172529-172566)
[»] chr3 (1 HSPs)
chr3 (104-168)||(4030229-4030293)
[»] chr8 (2 HSPs)
chr8 (121-168)||(3631174-3631221)
chr8 (122-155)||(28431397-28431430)
[»] chr4 (3 HSPs)
chr4 (110-168)||(30746107-30746165)
chr4 (122-169)||(32028235-32028282)
chr4 (127-160)||(36114915-36114948)
[»] chr2 (3 HSPs)
chr2 (128-168)||(16244926-16244966)
chr2 (121-169)||(36322714-36322762)
chr2 (121-164)||(9436122-9436165)


Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 11 - 249
Target Start/End: Original strand, 40516664 - 40516902
Alignment:
Q  11 catcatcatatgtctcttgagctcaggactttcactcatcaaaattattgtgcaacaagcaagtcactcatcaaaactattgtgcaatatgtgtgtcgga 110  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||| ||||||||| ||    
T  40516664 catcatcatatgtctcttgagctgaggactttcactcatcaaaattattgtgcaacaagcaattcactcatcaaaattattgttcaacatgtgtgtcaga 40516763  T
Q  111 atcaaggtggcccaccatgatttttcaaaagctacactttgtagcttctgtaaaatcacagtaggttgccgtgattcaaacacacgcacattgataccaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||| |||||||||    
T  40516764 atcaaggtggcccaccatgatttttcaaaagctacactttgtagcttctataaaatcatagtaggttgtcgtgattcaaacacacgcacagtgataccaa 40516863  T
Q  211 atatatatttaatgctctgtaagtagatagattttcact 249  Q
    ||||||| ||||||||||| |||||||||||||||||||    
T  40516864 atatatacttaatgctctgcaagtagatagattttcact 40516902  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 42910523 - 42910475
Alignment:
Q  122 ccaccatgatttttcaaaagctacactttgtagcttctgtaaaatcaca 170  Q
    ||||| |||||||||||||||| |||||||||||||||  |||||||||    
T  42910523 ccaccgtgatttttcaaaagctgcactttgtagcttctacaaaatcaca 42910475  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 187
Target Start/End: Complemental strand, 5173845 - 5173786
Alignment:
Q  128 tgatttttcaaaagctacactttgtagcttctgtaaaatcacagtaggttgccgtgattc 187  Q
    |||||||| |||| ||||| |||||||||||||||||||||| |||| |  |||||||||    
T  5173845 tgatttttaaaaatctacattttgtagcttctgtaaaatcacggtagatcaccgtgattc 5173786  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 168
Target Start/End: Original strand, 8825465 - 8825506
Alignment:
Q  127 atgatttttcaaaagctacactttgtagcttctgtaaaatca 168  Q
    ||||||||| |||||||||| |||||| ||||||||||||||    
T  8825465 atgattttttaaaagctacattttgtaacttctgtaaaatca 8825506  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 39887629 - 39887697
Alignment:
Q  104 tgtcggaatcaaggtggcccaccatgatttttcaaaagctacactttgtagcttctgtaaaatcacagt 172  Q
    |||| |||||| || | |||||| ||||||| ||||||||||||||||||||||||| |||||||||||    
T  39887629 tgtcagaatcatggcgacccaccgtgattttccaaaagctacactttgtagcttctgcaaaatcacagt 39887697  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 168
Target Start/End: Original strand, 36729584 - 36729629
Alignment:
Q  123 caccatgatttttcaaaagctacactttgtagcttctgtaaaatca 168  Q
    |||||||||||| ||||||||||||||||||| || ||||||||||    
T  36729584 caccatgattttgcaaaagctacactttgtaggttttgtaaaatca 36729629  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 168
Target Start/End: Complemental strand, 47430808 - 47430762
Alignment:
Q  122 ccaccatgatttttcaaaagctacactttgtagcttctgtaaaatca 168  Q
    |||| ||||||||| ||||||||||||| |||||||||| |||||||    
T  47430808 ccacaatgatttttaaaaagctacacttggtagcttctgcaaaatca 47430762  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 128 - 195
Target Start/End: Original strand, 43049436 - 43049503
Alignment:
Q  128 tgatttttcaaaagctacactttgtagcttctgtaaaatcacagtaggttgccgtgattcaaacacac 195  Q
    |||||||| |||||||||||||||||||||||| |||||||  || ||| |||||||||||| |||||    
T  43049436 tgattttttaaaagctacactttgtagcttctgcaaaatcatggtgggtcgccgtgattcaagcacac 43049503  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 168
Target Start/End: Complemental strand, 38577986 - 38577926
Alignment:
Q  109 gaatcaaggtggcccaccatgatttttcaaaagctacactttgtagc-ttctgtaaaatca 168  Q
    |||||| | ||| ||||| ||||||| |||||||||||||||||||| |||||||||||||    
T  38577986 gaatcacgttggtccaccttgattttccaaaagctacactttgtagctttctgtaaaatca 38577926  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 13697233 - 13697275
Alignment:
Q  128 tgatttttcaaaagctacactttgtagcttctgtaaaatcaca 170  Q
    ||||||||||||||||||||| ||||||||| | |||||||||    
T  13697233 tgatttttcaaaagctacactgtgtagcttcagcaaaatcaca 13697275  T

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Target: scaffold0020 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 159
Target Start/End: Original strand, 172529 - 172566
Alignment:
Q  122 ccaccatgatttttcaaaagctacactttgtagcttct 159  Q
    ||||||||||||||||||||||||||||||||||||||    
T  172529 ccaccatgatttttcaaaagctacactttgtagcttct 172566  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 104 - 168
Target Start/End: Complemental strand, 4030293 - 4030229
Alignment:
Q  104 tgtcggaatcaaggtggcccaccatgatttttcaaaagctacactttgtagcttctgtaaaatca 168  Q
    |||| |||||| ||||| ||||  | ||||||||||||||||||||||||||||||| |||||||    
T  4030293 tgtcagaatcacggtggtccactgtaatttttcaaaagctacactttgtagcttctgcaaaatca 4030229  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 168
Target Start/End: Original strand, 3631174 - 3631221
Alignment:
Q  121 cccaccatgatttttcaaaagctacactttgtagcttctgtaaaatca 168  Q
    |||| |||||||||||||||| ||||||||||| ||||||||||||||    
T  3631174 cccatcatgatttttcaaaagatacactttgtaacttctgtaaaatca 3631221  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 155
Target Start/End: Original strand, 28431397 - 28431430
Alignment:
Q  122 ccaccatgatttttcaaaagctacactttgtagc 155  Q
    ||||||||||||||||||||||||||||| ||||    
T  28431397 ccaccatgatttttcaaaagctacactttatagc 28431430  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 30746165 - 30746107
Alignment:
Q  110 aatcaaggtggcccaccatgatttttcaaaagctacactttgtagcttctgtaaaatca 168  Q
    ||||||| || |||||||||||||||||||| | ||||||||||| ||||| |||||||    
T  30746165 aatcaagatgacccaccatgatttttcaaaaacaacactttgtaggttctgcaaaatca 30746107  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 169
Target Start/End: Original strand, 32028235 - 32028282
Alignment:
Q  122 ccaccatgatttttcaaaagctacactttgtagcttctgtaaaatcac 169  Q
    |||| |||||||||||||||||||||||| |||||| || ||||||||    
T  32028235 ccactatgatttttcaaaagctacactttatagcttatgcaaaatcac 32028282  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 160
Target Start/End: Original strand, 36114915 - 36114948
Alignment:
Q  127 atgatttttcaaaagctacactttgtagcttctg 160  Q
    |||||||||||||||||||||||| |||||||||    
T  36114915 atgatttttcaaaagctacactttatagcttctg 36114948  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 16244966 - 16244926
Alignment:
Q  128 tgatttttcaaaagctacactttgtagcttctgtaaaatca 168  Q
    ||||||| ||||||||||||| |||||||||||||||||||    
T  16244966 tgattttccaaaagctacactctgtagcttctgtaaaatca 16244926  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 36322714 - 36322762
Alignment:
Q  121 cccaccatgatttttcaaaagctacactttgtagcttctgtaaaatcac 169  Q
    |||||| ||||||||||||| ||||||||||||||||||  ||||||||    
T  36322714 cccaccgtgatttttcaaaaactacactttgtagcttctacaaaatcac 36322762  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 164
Target Start/End: Complemental strand, 9436165 - 9436122
Alignment:
Q  121 cccaccatgatttttcaaaagctacactttgtagcttctgtaaa 164  Q
    ||||| |||||||||||||| ||||||||||||| |||||||||    
T  9436165 cccactatgatttttcaaaaactacactttgtagtttctgtaaa 9436122  T

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